Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01857 ATGTTGTTTTCCATTCCATTGTTTGTATTCTTTTCAACTATTTTCTTATCAAGTGAGCAAATTATGGAAATCGAGGAAAAAGGTGATGAGATGATTACGGTTAGCAGTGAGCCAAGTTACGTGGAAACTAACAGAGTAACAAACTCTGGAATGAAAATGTCGAATCACGAAGTTGAAGAAGCAAGGTTCAAAGAATGTAGAAAGAACCATTCATATGGCAATGGTGGATACTCTCTTGATGGTTGTTTAGCGTTTTTACCAGACGGTGTTGAAGGTACACGTGAGTTTTTCATATGCGCTGCATGCAGATGTCATAGAAACTTCCACCGTCAAGAAACGATTCCAACTGCTTTTCCGTTAAACTCGTCATACCATCATCAACCAACGCCGTTAACGACGGTTTATGAGACTCCAAATGGATATGTTCAAATGAGTGGGCCGCCGAGGGGGAGCAGCACAAGTGGTGGAGATGGAGAAGGTTCAAGCTCAAAGTCGAAGAAGAGGTTTAGGACAAAGTTCACTCATCAACAAAAAGAGAAGATGTTTGATTTTGCTGACAAATCCGGATGGAAGATTAGGAAGAAAGATGATAAAATCGTTGAGGAGTTCTGTAACCAAATTGGTGTCAAATGTCAAGTTTTTAAAGCGTGGGTTCATAATAATAAACACACCCTTGGCAATAAGCCCTAG 690 0.4014 MLFSIPLFVFFSTIFLSSEQIMEIEEKGDEMITVSSEPSYVETNRVTNSGMKMSNHEVEEARFKECRKNHSYGNGGYSLDGCLAFLPDGVEGTREFFICAACRCHRNFHRQETIPTAFPLNSSYHHQPTPLTTVYETPNGYVQMSGPPRGSSTSGGDGEGSSSKSKKRFRTKFTHQQKEKMFDFADKSGWKIRKKDDKIVEEFCNQIGVKCQVFKAWVHNNKHTLGNKP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01857 229 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 39 228 - -
Car07g01857 229 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 228 - -
Car07g01857 229 MobiDBLite consensus disorder prediction 139 172 - -
Car07g01857 229 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Car07g01857 229 Gene3D - 150 227 - -
Car07g01857 229 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 166 222 IPR006455 -
Car07g01857 229 MobiDBLite consensus disorder prediction 139 160 - -
Car07g01857 229 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Car07g01857 229 SUPERFAMILY Homeodomain-like 152 225 IPR009057 -
Car07g01857 229 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01857 Car-Chr7 20714932 20715743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01857 62 225 ZF-HD Transcription Factor Family AT4G24660 43.678 1.67e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car07g01857 ZF-HD_dimer 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01857 - - cam:101499630 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01030 08 9800381 9801588 Car07g01857 07 20714932 20715743 PCT