Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01856 ATGTGCTTGATAACTAAGCAAATCGAAATTGATGAAAACAATGAAGAGATGGTTGGTAGCATAAACACTAACAGAGTAACAAACTCTGAAGTGAAAAAGTTGAATGATGAAGTTGAAGAAGCAAAGTTCAAAGAATGTAGAAAGAACCATTCATATGGCAATGGTGGATACTCTGTTGATGGTTGTTTAGAGTTTTCAGCAGATGGTGTTGAAGGTACACGTGAGTTTTTCATATGTGCTGCATGCAAATGTCATAGAAATTACCATCGTCAAGAAACGACACCAATAACGTCGTTTCATCATCAACCGACTCCCATAACGACAGTTTATGAGACTCCGACTGGATACCTCAAAATAAATGGACCACCACCAAGGGGGACTACTACCACCACAACTGCTCTTGCTCTTGCTCTTCCTTCCAAGAAGAGGTTTAGGACAAAGTTCACTCATGAACAGAAACAGAAGATGTTTGATTATGCTCAGAAATTAGGTTGGAAAGTTAAGAAGAAAGATCAGAATGTAGTTCAAGACTTTTGTAATCAGATTGGGGTAAAATGTCAAGTTTTTAAAGTGTGGGTTCATAATAACAAATACACCCTTGGCAAGAAGCCTTAG 615 0.3805 MCLITKQIEIDENNEEMVGSINTNRVTNSEVKKLNDEVEEAKFKECRKNHSYGNGGYSVDGCLEFSADGVEGTREFFICAACKCHRNYHRQETTPITSFHHQPTPITTVYETPTGYLKINGPPPRGTTTTTTALALALPSKKRFRTKFTHEQKQKMFDYAQKLGWKVKKKDQNVVQDFCNQIGVKCQVFKVWVHNNKYTLGKKP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01856 204 Pfam ZF-HD protein dimerisation region 41 93 IPR006456 -
Car07g01856 204 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 42 92 IPR006456 -
Car07g01856 204 SUPERFAMILY Homeodomain-like 132 202 IPR009057 -
Car07g01856 204 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Car07g01856 204 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 23 203 - -
Car07g01856 204 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 141 198 IPR006455 -
Car07g01856 204 Coils Coil 24 44 - -
Car07g01856 204 Gene3D - 133 201 - -
Car07g01856 204 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01856 Car-Chr7 20667953 20668655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01856 42 200 ZF-HD Transcription Factor Family AT4G24660 41.860 5.43e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car07g01856 ZF-HD_dimer 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01856 - - cam:101499630 285.419