Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01788 ATGGAGAAAGGGGAATCATCAGCTAATTATGATCCAAGTATATTCAAATTGGATGAGGCTTCTGTGACAGTTTCCTCTAATTCTGGAAACAGTAAAGAATCTGTGAACAAATGGATGGCATTTGCTGACAAAACTGATGAAAATGGTACAAAAAAAGGTCCTTCTGTGTCAAATAATTTGAGTTTGAAGAACTCATCATCTTGTGATGATGGACAAATTTTAACTGAAGCAACAATAGCTGAGAGGACTGCTGAATGGGGACTTGGTGTGAATTCAGGCAATTTCAAAGCAGCAATTGAGACAACAACAAATTCTTTAGTTGATTCTGATAGGAACAAAAGCATGTCAGATAGGTATGTTGATTCAACAAGGACTTCTGGTGAATCAAATTATGGTTCTGAGTATAAATTGTCAGGGGTGTTTCCAAGAGTTTCACAAGAGTTGAAGGAAGCTTTGGCTACACTTCAACAAACATTTGTTGTCTCAGATGCTACTAAACCTGATTGCCCTATCTTGTATGCAAGCAGTGGATTTTTTAGTATGACTGGTTACACTTCAAAAGAGGTTATTGGAAGGAATTGCCGGTTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGAGAAAATTCGGGATGCAACTAAGAATGGTAAAAGTTACTGCGGAAGACTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAACCTTCTCACTGTAACTCCAATCAAGGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGTGTGAATGAGAAGGAACTAAGACCAAATGGATTGCCAAAGTCATTAATTCGCTATGACGCTCGTCAAAAGGAGAAGGCTATGGGTTCAATCACTGAGGTTGTTCAAACTGTTAAGGATCCAAAATCCACTATTCGCAGTATGAATGAAGACACTGCCGCCACAAAGCATGAAGAGCTAGAGCAACTCAATTATGATTTTGCTTTGCCAAAGTCTGTTGAATCTGAGATTGCTAGTACACCACCACCTGGTAGAAAATCTTCAATGAACTTCAAAGATGATAATAATTTGTCACGCTTTAGTTCTTATGAGGAAAGGAACAACAAGTCATCAAGAAAATCTGGAATGACTTCTTTCAAAGGTGTTAAAGGGAAATCAATGAGTTCTGCAGTGAGAGATAAGGAGAAGGTTATTGTTGAACCTGAAGTTTTGATGACAAAGGAAGTAGAGTGGGCCAATTGGGAGCAAAGAGAGAGGGATATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGCCCAATTATATTTGCATCTGATAGCTTCCTTGAGCTTACAGAGTATACCCGAGAAGAAATTTTGGGTCGAAACTGCCGGTTTCTTCAAGGACCAGAAACAGACCAAGCAACTGTCAATAGGATTAGAGATGCTATCAAAGATCAAAGGGAAATCACAGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATCTAGAACCTTTAAGAAACCGCCTCTCTGAGGGTTCTGAGATACAAAGTGCTAAGTTGGTAAAAGCCACCGCAGAGAATGTTGATGAAGCTGTTCGAGAACTTCCTGATGCAAATTTGAGACCAGAAGATTTGTGGTCACTTCATTCTCAACCTGTTTTTCCAAGACCACACAAAAAGGACAATCCTTGTTGGGTAGCTATTCAAAAGATAACTGCAAGAGGTGAGAAAATTGGCTTAGATCATTTTGTGCCTATAAGGCCGTTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCGAGGTACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAATAAGGTTCATCGAGCGTGTGTTGAAAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAGCACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTACTGACTTCTGCCCTGGAGGTGAGTTGTTTGCATTACTTGACAGGCAGCCGATGAAGATTTTAAAAGAAGATTCAGCAAGATTCTATGCAGCTGAAGTTGTTCTTGGTTTGGAATATCTCCATTGTTTGGGTATAATTTATCGTGACTTAAAGCCTGAAAATCTCTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTTGATCTATCATTTATTACATCTTGTAAACCTCAGATTGTGAAGCAGTCGTTACCTAGTAATAGAAGAAGATCTCGAAGTCAGCCACCGCCAATATTTGTCGCAGAGCCAGTTACACAATCAAACTCATTTGTTGGAACCGAAGAATATATTGCCCCGGAAATCATAACCGGAGCTAGGCATACAAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTATATGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGATAATTAATGCATTATTGCAAAGAGACCCAGGCAGTCGTCTAGGTTCAACTACAGGATCCACTGAAATCAAACAACATCCTTTTTTTCGTGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGATATTCCTCTTCAACTGATAGGAAAAGATCCAACAATAAAGGACAAGAAGTGGGAAGATGATGGTGTGCTAGTTAGCTCCATTGATATGGATATTTTTTGA 2898 0.393 MEKGESSANYDPSIFKLDEASVTVSSNSGNSKESVNKWMAFADKTDENGTKKGPSVSNNLSLKNSSSCDDGQILTEATIAERTAEWGLGVNSGNFKAAIETTTNSLVDSDRNKSMSDRYVDSTRTSGESNYGSEYKLSGVFPRVSQELKEALATLQQTFVVSDATKPDCPILYASSGFFSMTGYTSKEVIGRNCRFLQGPETDMNEVEKIRDATKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKDPKSTIRSMNEDTAATKHEELEQLNYDFALPKSVESEIASTPPPGRKSSMNFKDDNNLSRFSSYEERNNKSSRKSGMTSFKGVKGKSMSSAVRDKEKVIVEPEVLMTKEVEWANWEQRERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVNRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSEIQSAKLVKATAENVDEAVRELPDANLRPEDLWSLHSQPVFPRPHKKDNPCWVAIQKITARGEKIGLDHFVPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMLNRNKVHRACVEREIISLLDHPFLPALYTSFQTSTHVCLITDFCPGGELFALLDRQPMKILKEDSARFYAAEVVLGLEYLHCLGIIYRDLKPENLLLQKDGHIVLTDFDLSFITSCKPQIVKQSLPSNRRRSRSQPPPIFVAEPVTQSNSFVGTEEYIAPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQIINALLQRDPGSRLGSTTGSTEIKQHPFFRGINWPLIRNMSPPPLDIPLQLIGKDPTIKDKKWEDDGVLVSSIDMDIF 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01788 965 ProSiteProfiles PAC domain profile. 502 556 IPR000700 -
Car07g01788 965 Pfam PAS domain 165 261 IPR000014 -
Car07g01788 965 Pfam PAS domain 451 543 IPR000014 -
Car07g01788 965 MobiDBLite consensus disorder prediction 45 64 - -
Car07g01788 965 Gene3D Phosphorylase Kinase; domain 1 628 712 - -
Car07g01788 965 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Car07g01788 965 TIGRFAM sensory_box: PAS domain S-box protein 170 261 IPR000014 -
Car07g01788 965 TIGRFAM sensory_box: PAS domain S-box protein 455 543 IPR000014 -
Car07g01788 965 SMART pas_2 146 215 IPR000014 -
Car07g01788 965 SMART pas_2 430 499 IPR000014 -
Car07g01788 965 SUPERFAMILY PYP-like sensor domain (PAS domain) 447 543 IPR035965 -
Car07g01788 965 Pfam Protein kinase domain 632 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g01788 965 MobiDBLite consensus disorder prediction 340 392 - -
Car07g01788 965 SMART serkin_6 629 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g01788 965 SMART pac_2 505 547 IPR001610 -
Car07g01788 965 SMART pac_2 221 263 IPR001610 -
Car07g01788 965 CDD PAS 455 543 IPR000014 -
Car07g01788 965 PANTHER BNAA02G07840D PROTEIN 100 964 - -
Car07g01788 965 Gene3D PAS domain 417 581 - -
Car07g01788 965 ProSiteProfiles Protein kinase domain profile. 629 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g01788 965 Gene3D Transferase(Phosphotransferase) domain 1 713 930 - -
Car07g01788 965 ProSiteProfiles PAS repeat profile. 428 501 IPR000014 -
Car07g01788 965 PANTHER FLIPPASE KINASE 1-RELATED 100 964 - -
Car07g01788 965 SUPERFAMILY PYP-like sensor domain (PAS domain) 165 257 IPR035965 -
Car07g01788 965 CDD STKc_phototropin_like 627 939 - -
Car07g01788 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Car07g01788 965 SUPERFAMILY Protein kinase-like (PK-like) 607 942 IPR011009 -
Car07g01788 965 MobiDBLite consensus disorder prediction 108 127 - -
Car07g01788 965 ProSiteProfiles PAC domain profile. 218 272 IPR000700 -
Car07g01788 965 Gene3D PAS domain 158 332 - -
Car07g01788 965 ProSiteProfiles PAS repeat profile. 144 217 IPR000014 -
Car07g01788 965 MobiDBLite consensus disorder prediction 346 369 - -
Car07g01788 965 CDD PAS 171 260 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01788 Car-Chr7 18662491 18673746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01788 10 964 AGC Kinase Gene Family AT5G58140 68.356 0.0 1300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Car07g01788 Pkinase 1.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01788 K20715 - gmx:100804783 1521.91