LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01769	ATGGATCTCGGGTTTTTCCTAACCTGCTTCTGGAAAGTCCTCAAAGTTAGGAAACCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACATGAATTTGTCTTGATCCATGTAGAGAAAAGTAGAAGATATATTGTCAAAGATCTCCTTGGGCATGGGACATTTGGACAAGTGGCCAAATGCCGGGATTCAGATACCGACAGTTTTGTTGCTGTGAAGATCATTAAAATACAACCTGCATACTATCAACTGGCGCTGGTTGAAGAGACTATTTTAACAATGCTGTTCTCTAACCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGCCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGTAGCAATGTGAAGCCAGCAGAAATAAAGATTATTGACTTTGGATCAGCATGCACGGAAAATCGCACTGTTTACTCCTATATTCAGGGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAGTATCCTAACCAATGA	543	0.3923	MDLGFFLTCFWKVLKVRKPLVARLTKEIVETYQICNPHEFVLIHVEKSRRYIVKDLLGHGTFGQVAKCRDSDTDSFVAVKIIKIQPAYYQLALVEETILTMLFSNQILCGLALLKDAAIIHCDLKPENILLCTSSNVKPAEIKIIDFGSACTENRTVYSYIQGRYYRSPEVLLGYQYPNQ	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01769	180	PANTHER	BNAC04G29850D PROTEIN	102	177	-	-
	Car07g01769	180	PANTHER	BNAC04G29850D PROTEIN	47	102	-	-
	Car07g01769	180	SMART	serkin_6	51	180	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01769	180	Gene3D	Transferase(Phosphotransferase) domain 1	103	180	-	-
	Car07g01769	180	Gene3D	Phosphorylase Kinase; domain 1	30	102	-	-
	Car07g01769	180	SUPERFAMILY	Protein kinase-like (PK-like)	43	177	IPR011009	-
	Car07g01769	180	Pfam	Protein kinase domain	102	177	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01769	180	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	102	177	-	-
	Car07g01769	180	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	47	102	-	-
	Car07g01769	180	ProSiteProfiles	Protein kinase domain profile.	1	180	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01769	180	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	119	131	IPR008271	GO:0004672\|GO:0006468
	Car07g01769	180	ProSitePatterns	Protein kinases ATP-binding region signature.	57	80	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01769	Car-Chr7	18315417	18319667	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g01769	101	174	MAP Kinase Gene Family	AT3G59790	43.421	2.96e-11	59.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Car07g01769		Pkinase	6.7e-16	CL0016