Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01740 ATGGGATCCAATAGTAGCAGACCAACTTCATCTACTTCTAAGGGACTCAGAGGGTTTCACTCTTATTGTCTTGGAAGTTGTTCTGGATCTCATGGCACTGATAATCAACAACACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTTACATATGCTGATGGAAATCTATCGGACTCAAATGAGATGAAAACAAAGTCTTTTAGAAAGGTTAAAACTAAATACAGTGACATTACTTGTATGTCTAAGATCAACCTTGATGAGTGGAGTGAAACAAGGATCCCCAACACTTCGTCTCGAAGTGGTACCAGCACTGTTCATGCTTCTTCAACTCATTCGTTGAATCCTACACGTCGATTCCTTTCTCGGTTTGGCATCATTCCCAGTAATATAAACTTCAGACTTAACAGATTTACCAGTTCGAGGTCGTCAAGATCTCGTCCTGTTACTTCTGCAAGTTTGTCAATATTTGACAATGATGTTGAGCATAATCTACATCAAGAACCTTGTAGCAGTTTGATTAACAGAAATGAAACTCGATGGTGTAGCAGCTTGCTACCTGCATCTTTTGTTAATCAAATACCTACAGAGTGTCATGAAGATACTCCTAATAGTAGCAATCCCACTAGTGGCTTTGGGGCAAGAGATGAGTTGGATGTGAGCTTATTTTCTTCGAGAACTCGAGCAGACACAGAAAATATTGAAACTAGACATATAGATCGACAAACTGGAGCTCGAGAACCAGTTGAACCGAATGCTCGTTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTGTCTGATCTTACCTTTTTCCCTCTGCAACAAGAGAGAGAACTGAGAGATGCTAATCAGAATGTGGCAAATTCAAGAATGTCACCATCTGATCATAGTGTTGTTAGTTCTTCTAGTATGTCTAACTCCATGTTTAGCATTCAAAACTATGACGTTGAGACCTCACGTTCGAGAGACGGTAGATATCAGGATCTACTAGAGCATAGGTCCAACTTCCTTGAACGAAGAAGAAGATTACGGTCACAGGTCCGTTCACTTCAGCGGCTGGGAAGCCGGTTTGAAAATCATTCTGCACATGAGAGATCATGTATCTTGTCTGATCGACATAGAAGTGGTCGTTGTACATGCCGATTCATAAACCGTGATACTAATTCAAATGATGATACTGGTGCTAGGGCTAGCATATCAAGAATTGTTATACTCGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTACCTTCCCATCCTTCTGTATCTTCCATTGGATCTGTTCCCGCGCCAATCAGTGTTGTGGATTCCTTGCCTCTCAAGTTATATGATAAGTTGCTTAAAGATCAAGAAGATGCTACAGAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCGTGCGAGTTCTGCCTTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGCGTATGTCCACTATGTCGAAGGAACATCTGCATTTTGGATGCAACACCGACTCAGAATTAG 1587 0.4096 MGSNSSRPTSSTSKGLRGFHSYCLGSCSGSHGTDNQQHQVCDQNKVNGSDVTYADGNLSDSNEMKTKSFRKVKTKYSDITCMSKINLDEWSETRIPNTSSRSGTSTVHASSTHSLNPTRRFLSRFGIIPSNINFRLNRFTSSRSSRSRPVTSASLSIFDNDVEHNLHQEPCSSLINRNETRWCSSLLPASFVNQIPTECHEDTPNSSNPTSGFGARDELDVSLFSSRTRADTENIETRHIDRQTGAREPVEPNARFSRTLSVGRLRDRVLRRSTLSDLTFFPLQQERELRDANQNVANSRMSPSDHSVVSSSSMSNSMFSIQNYDVETSRSRDGRYQDLLEHRSNFLERRRRLRSQVRSLQRLGSRFENHSAHERSCILSDRHRSGRCTCRFINRDTNSNDDTGARASISRIVILAEALFEVLDEIHLQSVVLPSHPSVSSIGSVPAPISVVDSLPLKLYDKLLKDQEDATECYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHSVCPLCRRNICILDATPTQN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01740 528 Pfam Ring finger domain 472 515 IPR001841 -
Car07g01740 528 SUPERFAMILY RING/U-box 451 521 - -
Car07g01740 528 SMART ring_2 473 514 IPR001841 -
Car07g01740 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 519 IPR013083 -
Car07g01740 528 CDD RING-H2_PA-TM-RING 472 515 - -
Car07g01740 528 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 528 - -
Car07g01740 528 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 528 - -
Car07g01740 528 ProSiteProfiles Zinc finger RING-type profile. 473 515 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01740 Car-Chr7 17970661 17974415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01740 220 528 C3H Transcription Factor Family AT5G45290 58.567 5.82e-105 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01740 - - cam:101492704 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00827 08 7418299 7422585 Car07g01740 07 17970661 17974415 PCT