Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01681 ATGCCGAAGGCTAAAGCTGATTCCAAACCCGCTGATAACAGGTTAAAGCGCAAAGGCGCAGGAACCGGAACGAAGCAGTCGAAGAAAGCTGCTAAGGATCCTAACAAGCCAAAGAGGCCTCCGAGTGCTTTCTTCGttttcatGTCTGACTTCAGAGAACAATATAAGAAGGATCATCCTAATAACAAATCCGTCGCCGCTGTCGGTAAAGCTTGCGGAGAAGAATGGAAATCGTTGTCTGATGCTGATAAGGCTCCCTATGTTGCTAGGGCATTGAAGAAGAAAGCAGAGTATGAGAAAAATGTTCAGGCTTACAATAGGAAACAGGCGGGAATAGAGGAGGAAGATGGTTCTGACAAGTCGAAATCTGAAGTTCATGATGAGGATGAAGAGGAGgaggacgatgatgaagatgatgatgagtga 426 0.4225 MPKAKADSKPADNRLKRKGAGTGTKQSKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEEWKSLSDADKAPYVARALKKKAEYEKNVQAYNRKQAGIEEEDGSDKSKSEVHDEDEEEEDDDEDDDE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01681 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 - -
Car07g01681 141 Coils Coil 88 115 - -
Car07g01681 141 MobiDBLite consensus disorder prediction 126 141 - -
Car07g01681 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 IPR031061 -
Car07g01681 141 MobiDBLite consensus disorder prediction 1 42 - -
Car07g01681 141 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Car07g01681 141 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Car07g01681 141 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Car07g01681 141 Gene3D High mobility group box domain 21 122 IPR036910 -
Car07g01681 141 SUPERFAMILY HMG-box 28 109 IPR036910 -
Car07g01681 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Car07g01681 141 MobiDBLite consensus disorder prediction 98 141 - -
Car07g01681 141 MobiDBLite consensus disorder prediction 1 19 - -
Car07g01681 141 SMART hmgende2 36 107 IPR009071 -
Car07g01681 141 CDD HMGB-UBF_HMG-box 37 100 - -
Car07g01681 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Car07g01681 141 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01681 Car-Chr7 17127455 17129364 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car07g01681 HMG_box 2.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01681 K25507 K22507 ahf:112797235 195.667