Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01673 ATGGGAGGTGATAGTGCCGTTGATGATTCTGCTTCGGAATCCAAGTGCGAAGTTGAAGGTGTTAACATCAACGTTCGATGCTCCAATGGTACCAAATTTTCGGTTCAGGTTTCCCTCGATTCCACCGTTGGATCCTTCAAGGATCTCATTGCGCGTAAAAGTGATATCCCTTCCCAACAACAACGCCTCATTTACAAGGGACGTATATTGAAGGACGATCAAACGCTTCAAAGCTATGGTTTGGAGGCAGATCACGCTGTCCACTTGGTTCGGAGCTTTGCTCCTACAAATACAAATAGTGGGACCAACAGTAGTGGCACAAATACCACAACAAATGATTCTGGAGGCGCTGGAGCTAATGTTGGTGGGGGTTTGGGAGGGCTCGGTTTTGGTGCTTCAATGTTCCCTGGACTAGGTACCAATGGCACTGGGGGGAGTGGCTTATTTGGTGACGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCTAACCCAAATTTAATGAGAGAAATGATGAACACACCTGCTATGCAGAATCTAGTAAATAATCCCGAGATAGTGAGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTCATGGATCGAAACCCCGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAATCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAATTTCAGCAGCTCATGGTGGCCTAGCCAGGGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGTTCTCCCATACCGAATACTAACCCACTTCCTAATCCTTGGTCCTCTACAGGAACTGGAGCTCCCCAAAGTAACACCAGAAGATCAACCACCGGTGGTGATTCTAGGCAGCAAGCACCTCCTGGCTTAGGAGGGCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGGGGTAATGGTATGCCAGATCCTGCTGTGTTGACCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCCCAAACTTTGAGTCAGATTCTTGATGCTAATACTGAACAGCGGGGCATGCCTGATTTAAATTCTCTTAGAGATGTAATGCAAAATCCAGAGTTCCTTCGTTTGTTTCAATCACCTGAGACATTGCAGCAACTATTGTCTTTCCAGCAATCCCTTATGTCTCAGCTTGGTCAGCAACAATCAACACGGGAACCGGGTCAAACTGGTGGAGGCACTGGTACGCTAGATAATCCCTCATTCTCTGTCATGCTGTTGTTTTAG 1425 0.4575 MGGDSAVDDSASESKCEVEGVNINVRCSNGTKFSVQVSLDSTVGSFKDLIARKSDIPSQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPTNTNSGTNSSGTNTTTNDSGGAGANVGGGLGGLGFGASMFPGLGTNGTGGSGLFGDGFPDLEQMQQPFISNPNLMREMMNTPAMQNLVNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGISAAHGGLARDQSTNPSTTSSETTAGSPIPNTNPLPNPWSSTGTGAPQSNTRRSTTGGDSRQQAPPGLGGLGLPGLEGMLGGNGMPDPAVLTQLMQNPAISQMMQSMLSNPQTLSQILDANTEQRGMPDLNSLRDVMQNPEFLRLFQSPETLQQLLSFQQSLMSQLGQQQSTREPGQTGGGTGTLDNPSFSVMLLF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01673 474 SMART CBM 398 433 IPR006636 -
Car07g01673 474 SMART CBM 142 183 IPR006636 -
Car07g01673 474 SMART CBM 354 395 IPR006636 -
Car07g01673 474 SMART CBM 196 235 IPR006636 -
Car07g01673 474 MobiDBLite consensus disorder prediction 279 362 - -
Car07g01673 474 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Car07g01673 474 PANTHER UBIQUILIN 6 466 - -
Car07g01673 474 MobiDBLite consensus disorder prediction 94 117 - -
Car07g01673 474 Gene3D - 191 249 - -
Car07g01673 474 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2B 6 466 - -
Car07g01673 474 Gene3D - 8 106 - -
Car07g01673 474 SUPERFAMILY Ubiquitin-like 19 108 IPR029071 -
Car07g01673 474 MobiDBLite consensus disorder prediction 443 466 - -
Car07g01673 474 SMART ubq_7 21 92 IPR000626 GO:0005515
Car07g01673 474 MobiDBLite consensus disorder prediction 286 340 - -
Car07g01673 474 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Car07g01673 474 CDD Ubl_Dsk2p_like 21 93 - -
Car07g01673 474 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01673 Car-Chr7 16997952 17003874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01673 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.286 8.92e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01673 K04523 - gmx:100776447 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00738 08 6504873 6510755 Car07g01673 07 16997952 17003874 PCT