Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01643 ATGGCTGATTCTCCCCCTCGAAGGAATTCTAGGTCCCCTTCACCCTGGAAAGCTCAAtcgaggtctagatcgaggtcaaggtcgaggtcTGTACCAAGACAAAGGCCAACATCCAATTCAAGAAGCCGTGGCAGATCAAGGTCTCGAAGTCCTGAAAGGGCCAATGCTACAAATCCTGGTAATACACTATATGTTACTGGTCTATCTTCAAGGGTCACTGACCGGGACCTAGAGGAGCACTTTTCCAAGGAGGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACAATGGATTCCCCTGAGGATGCTGAGCGCTGTATTAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAGCGGTCACGGAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGACTGAAAAATACAAGAGATTATGGccaacgcggcgaccatcggggagaccaacgtggtgactatcgtggtgaccatcgtggcgaccatcgtggtgactatcgcggcgatcaacgtggtgaccggggaaggaatcgtggtggtTCAGGTCGGGTTGATTATTCATATCGTAGGTCTCCAAGGCATTCACCATACCGCGGGGGCCATGATCATTCACCACAACGCTCACCCTATGGTGGGAGGTCTAGGAGGGAGAGGTCTAGGTCCATTCCTCATTCCCCTTATAGCCCCGACAGGAGATATGCTCGGGGATCTAGGGGAGAGATGTAG 783 0.3946 MADSPPRRNSRSPSPWKAQSRSRSRSRSRSVPRQRPTSNSRSRGRSRSRSPERANATNPGNTLYVTGLSSRVTDRDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSPEDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGQRGDHRGDQRGDYRGDHRGDHRGDYRGDQRGDRGRNRGGSGRVDYSYRRSPRHSPYRGGHDHSPQRSPYGGRSRRERSRSIPHSPYSPDRRYARGSRGEM 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01643 260 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 254 - -
Car07g01643 260 MobiDBLite consensus disorder prediction 206 220 - -
Car07g01643 260 PANTHER RNA RECOGNITION MOTIF 2 254 - -
Car07g01643 260 Gene3D - 4 145 IPR012677 -
Car07g01643 260 MobiDBLite consensus disorder prediction 137 260 - -
Car07g01643 260 MobiDBLite consensus disorder prediction 1 65 - -
Car07g01643 260 SMART rrm1_1 62 135 IPR000504 GO:0003723
Car07g01643 260 CDD RRM_RBMX_like 60 139 - -
Car07g01643 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Car07g01643 260 MobiDBLite consensus disorder prediction 227 260 - -
Car07g01643 260 MobiDBLite consensus disorder prediction 1 21 - -
Car07g01643 260 MobiDBLite consensus disorder prediction 51 65 - -
Car07g01643 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Car07g01643 260 MobiDBLite consensus disorder prediction 158 199 - -
Car07g01643 260 SUPERFAMILY RNA-binding domain, RBD 35 151 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01643 Car-Chr7 16558139 16561213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01643 63 146 Eukaryotic Initiation Factors Gene Family AT1G49760 29.762 7.52e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01643 K12897 - gmx:100800398 287.345