Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01627 ATGGAGGTAGAGAATAATGAAATGAAATCATTTAAGGATCTGGGCTTACCCGATTCATTGGTGGAAGCTTGTGATAAAATGGGTTGGAAGACTCCGCTAAAGATTCAAATAGAAGCAATTCCTCTTGCACTACAAGGAAAAGATGTGATTGGACTTGCCCAAACGGGTTCTGGTAAAACTGGAGCTTTTGCTCTTCCTATATTGCATGCACTCTTAGAAGCACCGCGCCCAAACCATTTTTTTGCTTGTGTGTTGTCTCCCACAAGGGAGCTTGCTATTCAAATTTCTGAACAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGTTAGCAAAGCAACCTCATATTATTGTTGGTACTCCTGGACGGGTGTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTTGGTAGATTAAAATACTTGGTCTTAGATGAGGCAGACAGGCTATTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGATTGATCCCTCGCGAGAGGAGAACATTCCTTTTTTCTGCTACAATGACTAAAAAGGTCGAGAAGCTACAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCCAAGTATTCTACTGTGGACACACTGAAGCAACAGTATCGCTTTGTGCCTGCAAAACACAAGGATTGCTACCTTGTATACATTCTCACTGAAATGTCAGGGAGTACATCAATGGTGTTCACTCGGACATGTGATTCAACACGTCTTCTGGCTTTGATTCTCAGGAATCTCGGTTTAAAAGCCATCCCAATTAATGGTCATATGAGTCAGCCAAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATTCTCCTTTGTACTGACGTAGCGAGTAGGGGACTCGATATTCCAGCAGTAGATATGGTGATTAACTACGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACGGCTCGTGCAGGACGCTCTGGGGTTGCCATTTCCCTTGTGAACCAGTATGAGCTGGAGTGGTACATTCAGATAGAGAAGCTTATAGAGCGTGTCAGCGAGGCCAAAAAAATAGCAGCAACGAAAATGAAAGAAACTGGAGGGAAGAAGAAACGGAGGGGCGAAGATTACGGAGAGGAAGAGGATATTGACAAGTACCTAGGTCTCAAAGATAAAAAATCATCTAAGAAATTTAGAAGATGA 1263 0.4212 MEVENNEMKSFKDLGLPDSLVEACDKMGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNHFFACVLSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSIKLAKQPHIIVGTPGRVLDHLKNTKGFSLGRLKYLVLDEADRLLNEDFEESLNEILGLIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFVPAKHKDCYLVYILTEMSGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIERVSEAKKIAATKMKETGGKKKRRGEDYGEEEDIDKYLGLKDKKSSKKFRR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01627 420 PANTHER BNAC02G41920D PROTEIN 4 402 - -
Car07g01627 420 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Car07g01627 420 Pfam Helicase conserved C-terminal domain 239 345 IPR001650 -
Car07g01627 420 Gene3D - 1 218 IPR027417 -
Car07g01627 420 PANTHER RNA HELICASE 4 402 - -
Car07g01627 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Car07g01627 420 MobiDBLite consensus disorder prediction 380 400 - -
Car07g01627 420 CDD SF2_C_DEAD 225 354 - -
Car07g01627 420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Car07g01627 420 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Car07g01627 420 Gene3D - 219 399 IPR027417 -
Car07g01627 420 SMART helicmild6 264 345 IPR001650 -
Car07g01627 420 SMART ultradead3 28 228 IPR014001 -
Car07g01627 420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Car07g01627 420 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Car07g01627 420 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01627 Car-Chr7 16387625 16394111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01627 8 367 Eukaryotic Initiation Factors Gene Family AT3G19760 32.143 1.11e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01627 K14777 - gmx:100775796 729.169