Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01613 ATGGCGGAGGAGAGATTCACGGGTGTGGTGCAATGGTTCAACAATGTCAAAGGCTTCGGTTTCATCAAACCCGATGACGGTGGTGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGACGGCTTCCGCACTCTTCTAGATGGAGACAACGTCGAGTTCGCCATCGCTACCGGCGACAACGACAAAACCAAAGCTGTCGATGTCACCGGCCTTAACGGCGCTCCTCTTCAGTCCAGACAGGACAACTACGGCGGAGGAGGCGGTGGTCGAGGATTCGGCGGCGGATTTAGAGGCAACGACAGGAGGAACGGCGGCGCCGGTGCTGGTGGTGCTGGATGTTACAACTGCGGTGATACTGGTCACATCGCTAGGGAATGCAACCGGAGTAATAACTCGGGCGGTGGTGGAGGTGGAGGCGGCGCTTGTTATACTTGCGGCGCGTTCGGCCACATCGCGAGAGATTGCATGCGTGGAGGAAACAACGGTGGTGGAATCGGCGGTGGAATCGGAGGCACATCTTGTTACAGATGCGGCGGGATCGGACACATAGCGAGAGATTGCGCTACTGCGAGAGTTGGAAGCGGCGGTGGTGGCTGTTATAAGTGCGGCGAAGTCGGTCACATAGCTAGGGACTGCAGCATTGAAGGAGGAAGGTTTGAAGGCGGAAGATTTGGTGGCAACAACAACAGCGGCGGCGGTGGCAATGGAGGAAAGAATACGTGCTTTAACTGTGGAAAGCCAGGACATTTTGCAAGGGAGTGCGTTGAAGCTTCTGGTTGA 783 0.5568 MAEERFTGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGFRTLLDGDNVEFAIATGDNDKTKAVDVTGLNGAPLQSRQDNYGGGGGGRGFGGGFRGNDRRNGGAGAGGAGCYNCGDTGHIARECNRSNNSGGGGGGGGACYTCGAFGHIARDCMRGGNNGGGIGGGIGGTSCYRCGGIGHIARDCATARVGSGGGGCYKCGEVGHIARDCSIEGGRFEGGRFGGNNNSGGGGNGGKNTCFNCGKPGHFARECVEASG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01613 260 PANTHER COLD SHOCK PROTEIN 2 131 259 - -
Car07g01613 260 PANTHER COLD SHOCK PROTEIN 2 104 165 - -
Car07g01613 260 PANTHER COLD SHOCK PROTEIN 2 1 98 - -
Car07g01613 260 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Car07g01613 260 ProSiteProfiles Zinc finger CCHC-type profile. 242 255 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Car07g01613 260 ProSiteProfiles Zinc finger CCHC-type profile. 175 188 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 SUPERFAMILY Retrovirus zinc finger-like domains 226 256 IPR036875 GO:0003676|GO:0008270
Car07g01613 260 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 SMART c2hcfinal6 241 257 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Car07g01613 260 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Car07g01613 260 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Car07g01613 260 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Car07g01613 260 ProSiteProfiles Zinc finger CCHC-type profile. 143 156 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 SMART csp_8 7 72 IPR011129 GO:0003676
Car07g01613 260 SUPERFAMILY Retrovirus zinc finger-like domains 164 215 IPR036875 GO:0003676|GO:0008270
Car07g01613 260 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Car07g01613 260 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 Gene3D - 170 216 - -
Car07g01613 260 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 98 - -
Car07g01613 260 PANTHER COLD SHOCK DOMAIN PROTEIN 2 104 165 - -
Car07g01613 260 PANTHER COLD SHOCK DOMAIN PROTEIN 2 131 259 - -
Car07g01613 260 Gene3D - 1 83 IPR012340 -
Car07g01613 260 Gene3D - 233 260 - -
Car07g01613 260 SUPERFAMILY Retrovirus zinc finger-like domains 104 158 IPR036875 GO:0003676|GO:0008270
Car07g01613 260 Pfam Zinc knuckle 240 255 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 Pfam Zinc knuckle 142 157 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 Pfam Zinc knuckle 175 189 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 Pfam Zinc knuckle 199 214 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 ProSiteProfiles Zinc finger CCHC-type profile. 200 213 IPR001878 GO:0003676|GO:0008270
Car07g01613 260 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Car07g01613 260 Gene3D - 110 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01613 Car-Chr7 16212235 16213322 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Car07g01613 CSD 3.6e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01613 K09250 - gmx:100806783 313.538