Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01598 ATGAGAACTCGAAACTCCGATTCGTCTTCCAAATCCACAACTTCTAAGAAGACGCCGCCGCCGAGGAAATCCGCCACCAAATCCGCCGTAGCATCCCCTCCACCAAAGCGCACGCCTACTTCAAAAACAAGAAACGCTAAGAAGATTGAGGTATCGCCCACAACCGATCCTTCATCTGGTTTCAATCCGGATCAATCTCAGAAGCAGAAACCATTAGCCAGGGCTACCACTACGAAATCTGCAAAGCGAAAAACACCAGGGAAACCGAGAACAAAAGTGGTTGCTGTCACTCCAAATTTGGAAGAGCAATTGGAGGCAGAAGCAGATGAAACTCCAGTTGCAGACAGTTATGAGGCAGCAGAGCAAGTGGAAGAACCTGGAAATGTTAAAGCCGTCGTTGCAGGTAATATTGAGAGTGAGAAAGAGGGGGAACAAAGTTTTGGCTGTGATGGATTATTTGATGGGACGGAACAAAAGCCCATGGAAGTGGATGAACCTGTTGCTGGAAAAGTTTGCAAATTGGTCGAAAAGGGAAAGAACATGGCAGATGCTGAACCAGTTGTTTCTCCGGATGCTTCCTTGTCTTTTAAACGATCAGGACACATCATTGTGGACCTCAATATATCCATGGCGGATAATGAAGATTATACTGGTGCAAAGGAGGGAGGGGAAGAGTCGAAAGAGGAAGACTTAAACATACAGGAGGGAGAGAGAGGAATGGAAGAGTTGAAAGAACAGGAAGGAGGAAAAGGAAAGAACATGTTGAAAGAGCAAGAAGGAGAGAAAGGAAAGGAAGAGTTGAACCAACAGAAAAGTGAGAAAGAAATGGAAGAGTTTAAAGTACAGGAAAGAGAAAAAGAAAAGGAAGAGTTGAAAGAACAGGAAGAGTTTAAAATACATGATGGAGAAACTGGAAACAAAGAGTTGAAAGAACAGGAGGGCGAGAAAGAAAAGGAGGAGTTGAAAGAACAAAAAGGAGAGAAGGGAAAGGAAGTGTTAGAAGAACCAGAAGGAAAGAAAGAAAAAGAAGAGTTGAAAGCACATGAAGGAGAGAAAGAGAAGGAAGAGTTAAACGAAGAGGAGCTAGAAAAAGCAAAAGGAGAGGAAACCAACATTGTTGAACATGAAGAGCACTCTAATGTAGAAGTAAAAGCTCAGCTGCAAAAAGACGTGAATCTCAACCATTATGGTGTCGATGGGCCAAAGAGAGATGAATTGTTAGATTTTGGAGAACAAGGGAGGGTGGAGCTTGATGAGGAAGATCCAGAGGAAAATCCAGAAGAAGATCCAGAGGAACCACCGGAAGAAACTGAGACATTGGATGAAGAGCATATGGAATTGGAAGCCATTGCAAAGCAGCGAAAGATTAACAAAGAGCATGAAATATTTGTTGGTGGACTGGACCATGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGAATTGGGGACGTAGTGGAAGTCAGGTTGCATAAACGTTCTTCAACTAATAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCTAGCAAGGAACATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGAAAACGATGTGGCACCGCTCCTAGTGAGGATAATGACACATTATTCTTGGGTAATATTTGCAATACATGGACAAAAGATGCTATTAAACAAAAGCTGAAGGACTATGGTGTAGAAGGGGTTGAAAACATTACACTCGTACCAGATGTTCAACGTCAAGGCATGAGCCGGGGCTTTGCATTCATTGACTTTTCTTGTCATGCTGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGTCATCCTTGGTCACGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCCACACGTGAACCAGACCCAGAGATAATGGCAAAGGTGAAATCTGTATTTATTAACGGCCTCCCTCTTCACTGGGACGAAGATCATGTGAGGAAGCTGCTTAAATCTTACGGTGAAATTATAAAAATTGTTTTGGCGAGGAATATGTCCACAGCTAAGAGGAAAGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTATTGATGGTGTTAATAAATCAGAATTGAAAGATGGGGCATCAAAGGTTAAAGTGAGAGCCAGGCTTTCAAACCCTTTGCCTAAAACGCCGGCTGTCAAGGGTGGCATGTGTGGTGGCTTCCGAATTGGTCATGCTAGAAGTGGAACCATACCAAGATCTGGAAGAGGTTTTGGGCGGGGAAGACAACCCTTTAGTAACCGGGGACATTTCAACAGGGACAGAGGTTTCCATCATCATGGGGGACGCAGTCAAATTGGAAGAATGAGTCTTCATGGTGACCCTGATTTTAGTATGCATCCAGATTTCCATCACACTCAGAGGCAATTTGGTCCACAAGGAGCTATGCCTATGAGGGGCGGACATTATGCAGGTAGTCGAGGTGGTGCTGCATTTGCTGGTCCATCTAGACAATATCATGATAGAGCATGGTATGGTATCCCCGATGGAGGTCCCGGTGAGCCTATTCCTCCAAGAAGGCCCTACTCACCAGGAGGACAGTTTGACATGCCTTTTATGGGAAGGCATATCGACGATCCATATTTATATGATGACAATATGCATGGAATCAAACGTCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGCCCCCGATTTGATTATGCCGATCCATCTCTATTTCACGGATCCCAATACCATGATTATGCTGGGGCTGGCAGCAGACAGTACCTACCAGACTATTATGGTTCTGATCACGGTGGAGGTCCATATTCATCTTTTTATAGGGGCGACGGCCCACATGGACACAGATACTATTAG 2883 0.4395 MRTRNSDSSSKSTTSKKTPPPRKSATKSAVASPPPKRTPTSKTRNAKKIEVSPTTDPSSGFNPDQSQKQKPLARATTTKSAKRKTPGKPRTKVVAVTPNLEEQLEAEADETPVADSYEAAEQVEEPGNVKAVVAGNIESEKEGEQSFGCDGLFDGTEQKPMEVDEPVAGKVCKLVEKGKNMADAEPVVSPDASLSFKRSGHIIVDLNISMADNEDYTGAKEGGEESKEEDLNIQEGERGMEELKEQEGGKGKNMLKEQEGEKGKEELNQQKSEKEMEEFKVQEREKEKEELKEQEEFKIHDGETGNKELKEQEGEKEKEELKEQKGEKGKEVLEEPEGKKEKEELKAHEGEKEKEELNEEELEKAKGEETNIVEHEEHSNVEVKAQLQKDVNLNHYGVDGPKRDELLDFGEQGRVELDEEDPEENPEEDPEEPPEETETLDEEHMELEAIAKQRKINKEHEIFVGGLDHDATEEDLRKVFQRIGDVVEVRLHKRSSTNKNKGYAFVKFASKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKDAIKQKLKDYGVEGVENITLVPDVQRQGMSRGFAFIDFSCHADAMLAYKRLQKPDVILGHAERTAKVAFAEPTREPDPEIMAKVKSVFINGLPLHWDEDHVRKLLKSYGEIIKIVLARNMSTAKRKDYGFVDFSTHEAAVACIDGVNKSELKDGASKVKVRARLSNPLPKTPAVKGGMCGGFRIGHARSGTIPRSGRGFGRGRQPFSNRGHFNRDRGFHHHGGRSQIGRMSLHGDPDFSMHPDFHHTQRQFGPQGAMPMRGGHYAGSRGGAAFAGPSRQYHDRAWYGIPDGGPGEPIPPRRPYSPGGQFDMPFMGRHIDDPYLYDDNMHGIKRPFYMTDPEPDYMGPNRLRPRFDYADPSLFHGSQYHDYAGAGSRQYLPDYYGSDHGGGPYSSFYRGDGPHGHRYY 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01598 960 SUPERFAMILY RNA-binding domain, RBD 461 604 IPR035979 GO:0003676
Car07g01598 960 Coils Coil 226 246 - -
Car07g01598 960 Gene3D - 406 537 IPR012677 -
Car07g01598 960 MobiDBLite consensus disorder prediction 1 112 - -
Car07g01598 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 460 538 IPR000504 GO:0003723
Car07g01598 960 MobiDBLite consensus disorder prediction 743 786 - -
Car07g01598 960 MobiDBLite consensus disorder prediction 210 381 - -
Car07g01598 960 SUPERFAMILY RNA-binding domain, RBD 625 739 IPR035979 GO:0003676
Car07g01598 960 Coils Coil 255 294 - -
Car07g01598 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 640 706 IPR000504 GO:0003723
Car07g01598 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 462 530 IPR000504 GO:0003723
Car07g01598 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 608 IPR000504 GO:0003723
Car07g01598 960 MobiDBLite consensus disorder prediction 6 22 - -
Car07g01598 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 638 718 IPR000504 GO:0003723
Car07g01598 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 625 IPR000504 GO:0003723
Car07g01598 960 MobiDBLite consensus disorder prediction 414 441 - -
Car07g01598 960 MobiDBLite consensus disorder prediction 217 381 - -
Car07g01598 960 MobiDBLite consensus disorder prediction 31 80 - -
Car07g01598 960 Coils Coil 338 370 - -
Car07g01598 960 PANTHER NUCLEOLIN-LIKE ISOFORM X1 344 954 - -
Car07g01598 960 CDD RRM_SF 462 530 - -
Car07g01598 960 Coils Coil 307 327 - -
Car07g01598 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 344 954 - -
Car07g01598 960 Gene3D - 627 781 IPR012677 -
Car07g01598 960 MobiDBLite consensus disorder prediction 140 164 - -
Car07g01598 960 Gene3D - 539 624 IPR012677 -
Car07g01598 960 CDD RRM_SF 640 714 - -
Car07g01598 960 CDD RRM_SF 542 605 - -
Car07g01598 960 SMART rrm1_1 639 714 IPR000504 GO:0003723
Car07g01598 960 SMART rrm1_1 461 534 IPR000504 GO:0003723
Car07g01598 960 SMART rrm1_1 541 618 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01598 Car-Chr7 16001776 16009809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01598 462 711 Eukaryotic Initiation Factors Gene Family AT1G22760 24.715 1.53e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01598 - - cam:101489023 1177.54