Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01578 ATGGCTGGTTTATTCTCATTaggaggaggaggtggaagaggaAACCAAGAAGGTGAATCacaacaacaacaacaacaaAATCAGATTCCACCAGCAGAGACACTATTTTGGTACAACAAAAACGACGACGTTTCATCCTATAGAGGATTAGAACTATGGAACcaacagcagcaacaacagcagcagGAAGATGTAATAGCAGGAGGAACGCAACAAGCACGGCCGTTTTTCTCGCGAGATCTCTATGGTTTAGGTGTGGGACCCAGCAGGGTTTCATCAGATGATCATCAGACGTCGAGATCGGCAGCTGCCTTCATGGCGATGCATCATCGGTCAACATCGTCGTCAGGAGGTGGTGTTGAAGGGATAAGCTGTCAAGATTGTGGTAACCAAGCTAAGAAAGATTGTCCTCACATGAGATGTAGAACTTGTTGTAAGAGTCGTGGTTTTGAATGTCAAACTCATGTTAAAAGCACTTGGGTTCCTGCTTCTAGACGCCGTGAAAGacaacaacaattagctgctactactactactacttcttctaatcctaAACGCCCTAGAGATTCTAACAATCTTCAAATTTCAACTCGTAATTTTCCCTCAGGGTTAGAGGAAGCAAATTTTCCTGCTGTGGTGAGTTCTCCAGCTGAGTTTAAGTGTGTAAGGGTTAGCTCAGTGGACGATGCAGATGAAAGGTACGCATATCAAACGGCTGTCAACATTGGAGGACATTTGTTCAAAGGAATTCTCTATGACTTTGGTCCGGAAACTAGTAGCaacaacaataatactaatattaatgatcataattataataataataatTACATGATTGGGGAATCCTCCGGTGTCGCCGTAGCTCAGCCGTTGAATCTCATCGCCGATTCTAATGCTGCCGTTGTTGCTTCTTCTGGAGCGCTTGTTGATCCTTCTTCCTTGTATTCGACTCCAATTAATGCCTTCATGACCACTAGTGGTACGCAATTCTTCCCTCGCCCGAGATCTTGA 1011 0.3828 MAGLFSLGGGGGRGNQEGESQQQQQQNQIPPAETLFWYNKNDDVSSYRGLELWNQQQQQQQQEDVIAGGTQQARPFFSRDLYGLGVGPSRVSSDDHQTSRSAAAFMAMHHRSTSSSGGGVEGISCQDCGNQAKKDCPHMRCRTCCKSRGFECQTHVKSTWVPASRRRERQQQLAATTTTTSSNPKRPRDSNNLQISTRNFPSGLEEANFPAVVSSPAEFKCVRVSSVDDADERYAYQTAVNIGGHLFKGILYDFGPETSSNNNNTNINDHNYNNNNYMIGESSGVAVAQPLNLIADSNAAVVASSGALVDPSSLYSTPINAFMTTSGTQFFPRPRS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01578 336 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 334 IPR007818 GO:0003700|GO:0006355
Car07g01578 336 MobiDBLite consensus disorder prediction 162 195 - -
Car07g01578 336 Pfam Domain of unknown function (DUF702) 122 257 - -
Car07g01578 336 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 124 166 IPR006510 -
Car07g01578 336 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 209 256 IPR006511 -
Car07g01578 336 MobiDBLite consensus disorder prediction 1 28 - -
Car07g01578 336 PANTHER PROTEIN SHORT INTERNODES 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01578 Car-Chr7 15659758 15662438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01578 1 336 C2H2 Transcription Factor Family AT3G51060 44.855 8.63e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Car07g01578 DUF702 4.7e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01578 - - gmx:100781981 338.961