Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01547 ATGGGAACTGATGGTTGTGAAGTGGTAGAGACATTACCAGATCCTCGCTCTTTTAAGGTACATCGTAGAATATGCACAGAACTCAGGAAATTAGTCAATAGAGTGTTAAGGATATTTCCGCAGATTGAGGCAGCACGCCCTCGGTCCTCATCAGGAATACCAGCTCTGTGTTTGCTAATCAGTACAGTTGATAAAGCCAAACAACTTCTGCAACATTGCTCTGACTCTAGTAGTCTCTACCTGGCAATAACAGGGGAGTCAATACTCTCAAAATGCCAAAAGACAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAGCATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATGATCGATGATCTTAGGTGTGTGACCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGGAAGGTTATGAGAGAATTGCTCCAGCAAGGTCCTTCAACCTCAGATAACGATTCAAAGGAAAGCTCAGACATTAAATCTCTTCAGTTTGCAGCGGCAAGACTTCATATTACATCCGCAACAACCATCATAGCAGAGAGAAGATCTATTAGGAAGTTATTACAAAAAGTTGGACCAAAAGACGAAACGAAAAAGGTGATCTTGAAAAATCTGTTGTATCTTCTGGTAAAGTATGGAAAATCAATCATAGGAGAACAGGTGGAGGTCTATACTCATTGTGAAGAACCAGTGGCAACTGAGAACTCTGGTCATGATTCTTTATGTATCCATCATGTGAAGTCAGACACATACGTGAACCACGATCAGTACGAAACTCGTGCCAGCGAGTTAGGTAGAGTTGCACCACCTGAGGAATATACATGCCCGATATCTTTAAGGTTGATGTATGATCCTGTCGTCATTGCTTCGGGAGAAACATATGAAAGGATGTGGATACAGAAATGGTTCAACGAGGGTAATGTTACATGCCCGAAAACAAAAAAGAAACTGTCCCATATGGCGTCGACTCCTAACATTGCTCTAAAGGAATTAATCTCAAAGTGGTGCAAAAATAATGGAGTCTCCATTACTGACCCGAGTAGACAAGCCGAAGACATTCACTCATGGGAAGCTTCTATCACTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTCTGAACCTGCCAATGGATTTTAGTAACATGTCACTTGGATCGATAGATACAAGTTATAATTCAGATTCCTCACATGTTAAGGCCGGTCATGGCTTGAATTCGATGTTGGTCAAGACTAGAGACGGTTCTCACAGGCGTCAATCTCATTCACAGATTCATGACACATATTTGATGTCCTTATCTAAACTTCATGAGCATCAATGGGATTCGCAATGCCAAGTCATTGAAGATATGAAAATAGATTTCACAAGCAATGACCAAGTTTTTATCTCTGTGTCGTTAGAGAATTTCATTGATCCACTTGTGAGATTTCTGAGCATTGCATATGATAAGCATGACACAAAAGCTCTGAGAGGTGGATGTAAGTTACTGTTGGAATTTACAAAGTACTGTAGAAATGGTCTGACAAACTTAAGCGAAGATACATGCAGTTTGTTGGCAAGTCTCCTTGAGTCAGAAGTGATTGGAGAAGCTCTTACCATACTGGAAGAATTGTCGAACAATTGGTCTAATAAAGCTAACGCCACAGCTTCCAGTGCACTAACAGCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTATCAACAGAAAGCTATTAGAATAATGTGCAATTTTTCATCCAATACTGAAATTTGTTCCTACATGGTGTCTCTGGGGTGCATCCCAAAATTAGTACCATTTTTCGAAGACAAGTTCCTTTGGAGACACTGTATAAGGATATTGAAAAACCTTTATGATACTAAAGACGGTAGGATGTGTGTTGTTGAAACAAAGGGATGCATGTCTTGTGTTGTTGAAATACTTGGGTCCGGCAGTGACGAAGAAAAGGAACCAGCACTGGCGATCGTACTATCTTTGTGTTCGCAACGGTTGGAATACTGTGAGATGGTTATGGACGAGGGTATTATACCATATCTTGTCAATATCTCCAATATGGGAAACGATAGCACAAAGGCGTATGCGTTGGAACTGCTTCGACTTTTGAGGGACGTAGCCAGCGAAGGTTGCTTTGAGCCGAATCTCAACAACTCACAAGATTCTAACGATCACTTTGAAGAAAATAAATTGTCCAAGAAGTCCACAATTTTGAAGAAGCTATCGTGGTTCTCAAAATCAAGTTCTGTTTCGTCCAAAAACAAGAGATGA 2280 0.4061 MGTDGCEVVETLPDPRSFKVHRRICTELRKLVNRVLRIFPQIEAARPRSSSGIPALCLLISTVDKAKQLLQHCSDSSSLYLAITGESILSKCQKTRKSLEKSLVQIQHIVPVMLAAEISRMIDDLRCVTFVLDSAEEEAGKVMRELLQQGPSTSDNDSKESSDIKSLQFAAARLHITSATTIIAERRSIRKLLQKVGPKDETKKVILKNLLYLLVKYGKSIIGEQVEVYTHCEEPVATENSGHDSLCIHHVKSDTYVNHDQYETRASELGRVAPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFNEGNVTCPKTKKKLSHMASTPNIALKELISKWCKNNGVSITDPSRQAEDIHSWEASITSIRSFGSSMNGLNLPMDFSNMSLGSIDTSYNSDSSHVKAGHGLNSMLVKTRDGSHRRQSHSQIHDTYLMSLSKLHEHQWDSQCQVIEDMKIDFTSNDQVFISVSLENFIDPLVRFLSIAYDKHDTKALRGGCKLLLEFTKYCRNGLTNLSEDTCSLLASLLESEVIGEALTILEELSNNWSNKANATASSALTAVSKILDSGNKEYQQKAIRIMCNFSSNTEICSYMVSLGCIPKLVPFFEDKFLWRHCIRILKNLYDTKDGRMCVVETKGCMSCVVEILGSGSDEEKEPALAIVLSLCSQRLEYCEMVMDEGIIPYLVNISNMGNDSTKAYALELLRLLRDVASEGCFEPNLNNSQDSNDHFEENKLSKKSTILKKLSWFSKSSSVSSKNKR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01547 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Car07g01547 759 Gene3D - 434 712 IPR011989 -
Car07g01547 759 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Car07g01547 759 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Car07g01547 759 CDD RING-Ubox_PUB 280 320 IPR045210 -
Car07g01547 759 SUPERFAMILY RING/U-box 264 350 - -
Car07g01547 759 PANTHER U BOX DOMAIN-CONTAINING 2 751 - -
Car07g01547 759 SUPERFAMILY ARM repeat 438 707 IPR016024 -
Car07g01547 759 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 751 - -
Car07g01547 759 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01547 Car-Chr7 15269678 15276130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01547 15 712 U-box Gene Family AT4G36550 38.223 7.20e-141 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01547 - - gmx:100798951 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00608 08 5228698 5233653 Car07g01547 07 15269678 15276130 PCT