Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01544 ATGATACCTAATAACACTGTTCCACAACAACCACCAAAAAGAGATCTAGATCCAACATTATTGAATATTAGATACAAAGAATGTGTGAAGAATCATGCAGCAAGCATAGGGGGTCATGTAACAGATGGATGTGGAGAGTTCATGCCAAGTGGAGAACAAAACACTCCACAACATTTCATCTGTGCTGCTTGTCACTGCCATAGAAGTTTTCACAGAAAACAAATTCATCCTATTAGGTTACTAACTCCATCAACTGAAGATATCAATATGTTTTATTATAATAATAATGATGATGGTCTTCAGTTATCAACAAAGAAGAGGTCTAGAACCAAGTTCACACAACAGCAGAAAGATAGAATGATGGAGTTTGCTCAGAAAATTGGCTGGAAGTTACAGAAACAACATGAGGAGGAAGTGGACAAATTTTGTTGTCAGCTTGGTTTTAAAACACAGGTTTTTAAGGTTTGGATGCATAATAGTAAGCAAGCCATGAAGAAGATTAAAACAGGTTCTTAG 516 0.3605 MIPNNTVPQQPPKRDLDPTLLNIRYKECVKNHAASIGGHVTDGCGEFMPSGEQNTPQHFICAACHCHRSFHRKQIHPIRLLTPSTEDINMFYYNNNDDGLQLSTKKRSRTKFTQQQKDRMMEFAQKIGWKLQKQHEEEVDKFCCQLGFKTQVFKVWMHNSKQAMKKIKTGS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01544 171 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Car07g01544 171 Gene3D - 93 166 - -
Car07g01544 171 SUPERFAMILY Homeodomain-like 95 167 IPR009057 -
Car07g01544 171 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 74 IPR006456 -
Car07g01544 171 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Car07g01544 171 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 105 162 IPR006455 -
Car07g01544 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 99 166 - -
Car07g01544 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 19 75 - -
Car07g01544 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 99 166 - -
Car07g01544 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01544 Car-Chr7 15239131 15240118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01544 24 166 ZF-HD Transcription Factor Family AT2G18350 47.486 2.89e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car07g01544 ZF-HD_dimer 3.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00605 08 5192609 5194699 Car07g01544 07 15239131 15240118 PCT