Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01540 ATGCAAGGTTGTTGCACTTGCTCCCAAACTCACATCATTGGAACATGCACATGCGCTATGTTTAATTCCAATTACTCTATGCTTTTCTCCAACAAACCTTATAATAACCAACACGATTACGAATATTTTGACGACTActcttcctatacctcttcctcttcttcttcttcctcctctGTTGATTGCACTCTCTCTCTCGGTACTCCTTCCACGCGTTTAACTGAAGACCAAGAGAAACGAACCCGTCGTTCTTCCCTCTCCAATTTCTGCTGGAATAATAATAATTCTTCCTCCCACTCCAAACATAATTCCCAATCTCAAACCAAGTCTAACAGAGGAAACAATATTGCTAACTCCAACAATGATTCTCTTCTTGCTCGTCGTTGTGCAAACTGTGATACCACTTCTACACCTCTTTGGAGGAATGGTCCTCGTGGCCCAAAGTCGCTATGCAATGCATGTGGGATAAGATATAAGAAGGAAGAGAGAAGAGCAAACGCCGCCGTTGCCACGTCAGCAGCGACTAACGGAAGCATAATGGAGTCAGGACACGTGTACAGCAACCAGAACAATTCATGGTACGCACACCCTCAGAGCCAAATGTTTGGTATTGTGGACGATTCCGATGGAGATTCAGAGAATGGCATTCCTTTCCTTTCTTGGAGACTCAACACTAGTCTCGTTCACGATTACACCAGATGA 702 0.4145 MQGCCTCSQTHIIGTCTCAMFNSNYSMLFSNKPYNNQHDYEYFDDYSSYTSSSSSSSSSVDCTLSLGTPSTRLTEDQEKRTRRSSLSNFCWNNNNSSSHSKHNSQSQTKSNRGNNIANSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAVATSAATNGSIMESGHVYSNQNNSWYAHPQSQMFGIVDDSDGDSENGIPFLSWRLNTSLVHDYTR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01540 233 MobiDBLite consensus disorder prediction 88 120 - -
Car07g01540 233 PANTHER GATA TRANSCRIPTION FACTOR 18 3 230 IPR044272 GO:0003700|GO:0009908
Car07g01540 233 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Car07g01540 233 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Car07g01540 233 SMART GATA_3 123 178 IPR000679 GO:0006355|GO:0043565
Car07g01540 233 PANTHER GATA TRANSCRIPTION FACTOR 18 3 230 - -
Car07g01540 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 170 - -
Car07g01540 233 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Car07g01540 233 Gene3D - 125 181 IPR013088 GO:0006355|GO:0008270
Car07g01540 233 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01540 Car-Chr7 15179775 15180797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01540 25 233 C2C2-Gata Transcription Factor Family AT3G50870 41.887 1.55e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car07g01540 GATA 6.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01540 - - gmx:100790571 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00600 08 5152353 5153929 Car07g01540 07 15179775 15180797 PCT
Car07g01540 07 15179775 15180797 Car08g00716 08 6254189 6263844 PCT