Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01523 ATGCCTGTTGATTTAGACAATGTttcaacaccttcaggtgaagctagcatctcctcctctggtAATCAAACAACTCCAAAACCCACCGCAAAGAAAAAGCATCCAGAAGCAGAAGTTATTGCTTTATCACCAACGACACTTTTAGCAACAAACAGATTCGTATGTGAAATATGCAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTTCATCGAAGAGGTCATAATCTACCATGGAAACTTAGGCAAAGATCGAGTAAGGAAATTAGGAAAAGGGTTTATGTTTGTCCTGAACCTAGTTGCGTTCATCATGATCCTTCTAGAGCTTTGGGAGATTTAACGGGGATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAATGTTCCAAGAAATACGCTGTTCAATCCGATTGGAAAGCTCACTCTAAAGTTTGTGGCTCCAGAGAGTATAAATGCGATTGTGGAACCgttttttctagGAGGGATAGTTTCATCACGCATAGAGCTTTTTGCGATGCGTTAGCGGAGGAAAATGCGAAATCTCAGACTGTTGGGAAGGCTAATTCAGAATCTGATTCCAAGGTTTTGACCGGAGATTCATCGCCGCCGTCGATGCCGGCGGCGACTGTTACTGCTGCAACTACTGCTCAGTCCAATAGTGTAGTGTCCTCTGGTTTGGAAACGCATAAGATAGAAAATCCCCCACAAATCATAGAGGAgccacaagttgttgttactacaactactgctagtactgctactactactaatgctttaaaTGGGAGCTGTAGCAGCAACAGTGCTAGCTCAACGAGCAACGGCGGTGCTACGACTACCAGTGGTGTGTTTGCAAGCTTGTTTGCTTCCTCAACAGCTTCAACTTCTGCCAGTCTGCAATCTCAAACATTAGCATTCACTGACCTAATTAGGTCCATGGGTTGTCCAGACCGCCCTGCAGATTTCTCAGCTCCTCCGACGTCGGAGGCTATATCACTCTGCCTCTCTACCAATCACGGATCATCAATTTTTGGAACAGGAGGGCAGGAGTGTCGTCAATATGCGCCGACGCCGCAGCCGCCTGCCATGTCTGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCCGCCACAAATGCCTCTTTGCTTCGTGGGCTTGGCATTGTGTCTTCGTCGGCTCCCTCTTCATCATCCGGTCAGCAAGATTGCCTGCATTGGGGTCTTGGACAAGTAGAACCGGAGGGTTCTAGTTTAGTTCCAGCAGGACTTGGACTCGGGCTTCCTTGTGACAGTGATTCCGGACTCAAAGAATTGATGTTGGGGACACCATCCATGTTTGGTCCTAAGCAAACCACTCTTGATTTTCTAGGATTGGGAATGGCTGCTGGCGGCAGTGCCGGTGGAGGCTTGTCTGCACTTATCACATCTATtggaggtggtggtggtggtggtTTGGATGTTACTGCAGCAGCATCCTTTGGTAATGGAGAGTTCTCTGGGAAAGATATTGGAAGGAGCTCATGA 1545 0.4291 MPVDLDNVSTPSGEASISSSGNQTTPKPTAKKKHPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEIRKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQTVGKANSESDSKVLTGDSSPPSMPAATVTAATTAQSNSVVSSGLETHKIENPPQIIEEPQVVVTTTTASTATTTNALNGSCSSNSASSTSNGGATTTSGVFASLFASSTASTSASLQSQTLAFTDLIRSMGCPDRPADFSAPPTSEAISLCLSTNHGSSIFGTGGQECRQYAPTPQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSAPSSSSGQQDCLHWGLGQVEPEGSSLVPAGLGLGLPCDSDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGGGGGLDVTAAASFGNGEFSGKDIGRSS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01523 514 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Car07g01523 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 513 - -
Car07g01523 514 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 513 - -
Car07g01523 514 SMART c2h2final6 94 124 IPR013087 -
Car07g01523 514 SMART c2h2final6 129 149 IPR013087 -
Car07g01523 514 SMART c2h2final6 53 75 IPR013087 -
Car07g01523 514 MobiDBLite consensus disorder prediction 187 213 - -
Car07g01523 514 Gene3D Classic Zinc Finger 107 188 - -
Car07g01523 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Car07g01523 514 MobiDBLite consensus disorder prediction 1 36 - -
Car07g01523 514 MobiDBLite consensus disorder prediction 9 28 - -
Car07g01523 514 Gene3D Classic Zinc Finger 30 98 - -
Car07g01523 514 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
Car07g01523 514 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01523 Car-Chr7 14983079 14986209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01523 1 514 IDZ Gene Family AT5G66730 55.835 9.09e-173 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car07g01523 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01523 K25869 - gmx:100806404 658.292