Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01508 ATGACTGGTCATCAAATAATCAATTACTCATTTTGGAGCTTTGTATTAGTTGTTGTGATGGTAACATTTTTCACTACAAATGTTAGTTCTGCTAAACAATCTCAAATAGAAGGTATGGAAATGAATGTGATTGATAAATGTTGGAGATTTAATCCTGAATGGAGGAAACATCGACAACAACTTGCTAAGTGCTCAATTGGCTATGTAGGAAAAATGACAAACAACATAGGTAAAGACCTCGTTCATTATAAAGTTATTGATTCTAGTGACAACCCTTTAAACCTACAACCTGGAACTTTGAGATATGGAGCTTCTAACATTCAAGGCAAAGTTTGGATCACATTCCAAAGGAACATGAACATTAGGCTTGAGAGACCCCTTCTCATTAGTAGTTTCACTACCATTGACGGTCGAGGCGTTGATGTCCACATCGCTAATAATGCATGTTTGATGATCTATAAGGCAACAAACATAATCATCCATGGAATTAGGGTTCATCATTGTCGACCTCAAGTTCCCGGAATGGTGATGGGTCCTAATGGAAAGATAATTCCGTTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCTGCTTCAAAGATTTGGATTGATCATAATACGCTTTATGATTGTCAAGACGGTCTTCTTGATGTTACGCGGGGTTCTACTGATGTGACAATCTCCAACAATTGGTTTAGGGAGCAAAATAAGGTTATGTTTCTTGGACACGATGATGGATTCATGAGAGACAAGAACATGAAAGTAACTGTTATATACAACTATTTTGGACCTAATTGCCGCCAACGCATGCCTAGAATTCGTCATGGATATGCGCATGTTGCAAACAATCTATACATGGGATGGACGCAATATGCAATTGGTGGAAGCATGGAACCAAGCCTTAAAAGTCAATCAAACCTTTTCATAGCACCAACGGAGAATAAGGAGGTGACATGGAGAAAAAGTAGTAATGGAATTGGAGATACGTGGGAATTTTATTCAGTTGGTGACGCCTTTGAAAATGGTGCATCCTTCATAGATACAAAAGGTGGACAAGTGAAAAAACCCAATTATAACCCTGAACAAAATTTTGAAGTTATTGATTCCAAATATGTGAGATCATTGACAAGCTCCTCGGGAATTTTACAATGCAGTAAAACTTCAATATGTTGA 1176 0.3776 MTGHQIINYSFWSFVLVVVMVTFFTTNVSSAKQSQIEGMEMNVIDKCWRFNPEWRKHRQQLAKCSIGYVGKMTNNIGKDLVHYKVIDSSDNPLNLQPGTLRYGASNIQGKVWITFQRNMNIRLERPLLISSFTTIDGRGVDVHIANNACLMIYKATNIIIHGIRVHHCRPQVPGMVMGPNGKIIPLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFREQNKVMFLGHDDGFMRDKNMKVTVIYNYFGPNCRQRMPRIRHGYAHVANNLYMGWTQYAIGGSMEPSLKSQSNLFIAPTENKEVTWRKSSNGIGDTWEFYSVGDAFENGASFIDTKGGQVKKPNYNPEQNFEVIDSKYVRSLTSSSGILQCSKTSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01508 391 SUPERFAMILY Pectin lyase-like 36 379 IPR011050 -
Car07g01508 391 SMART amb_all 118 315 IPR002022 -
Car07g01508 391 Gene3D - 41 384 IPR012334 -
Car07g01508 391 PANTHER PECTATE LYASE 12 388 - -
Car07g01508 391 Pfam Pectate lyase 129 309 IPR002022 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Car07g01508 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Car07g01508 391 PANTHER PECTATE LYASE 18-RELATED 12 388 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01508 Car-Chr7 14761778 14763604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01508 72 318 Polysaccharide Lyase AT5G09280 68.548 1.18e-134 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01508 K01728 - gmx:100811216 672.93