Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01505 ATGGGTTGGCTTACCAAGTTGCTAAAGGGTTCCAACCATAAATATTCAGGACGAGGATACCACGGGAAATATGGACATGACAGAAATTCGAATAGTCGCGATAATTCAGCGGATGATTTGAATGATATTGAGAAAGAAGAAATTGATCGTGCAATAGCGCTATCTCTTTCAGAGGAGGATCCCAAAGGGAAAAAAGTTATAGAGGACGACTCTCAATCTGAAGATGAGGAACTATGTCCACTAGACGACGAAGAAGATGACCATCTTGGTGATGTTCAACAAGACGAAGAAGAGCATGTTGCTAAAATTCAACAGGATGAAGATAAAAATCTCGATGAAGTTCAACTCGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCTCCGCCCCGATCTTACACTGATTCTATATTTCAACCTTTTACAAACCTCTTTCCACCCGTGTACAGAACCTGTGCCGGCTGCAATGCTGAAATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGCTGTCTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTGCCAATCACTGATTATGAGTATTCTATGTCTGGAAATCGGCCTTACCATAAGTCGTGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGAACTTTATTCCGCAAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCGTCACACGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAATATCTGTTGCTTGATGATGGTCGAAAGCTGTGCCTTGAGTGTCTCGATTCGGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATTCAAGAATTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAAACTATCCCCACTattttAAGGAGACCAAGTATAGGGGCAGGCTACCGGGTCATAGATATGATAACTGAACCTTTTAGGCTGATACGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTACTGACAGGATCAATCCTGGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGTACTGTCATCTTTCCCGTGATAAAAAACCATGTTGAAAATTTagggttgtttacttacaaaaaacagtttcagttttcattttttgaaatttgtgttcatattagattgctaacaagaagatggaaaactcagtgtagtgaataa 1392 0.3922 MGWLTKLLKGSNHKYSGRGYHGKYGHDRNSNSRDNSADDLNDIEKEEIDRAIALSLSEEDPKGKKVIEDDSQSEDEELCPLDDEEDDHLGDVQQDEEEHVAKIQQDEDKNLDEVQLEEDEQLARAIQESLSIGSPPRSYTDSIFQPFTNLFPPVYRTCAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKSCYKELHHPRCDVCKNFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGTVIFPVIKNHVENLGLFTYKKQFQFSFFEICVHIRLLTRRWKTQCSE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01505 463 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Car07g01505 463 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Car07g01505 463 SMART uim 43 62 IPR003903 -
Car07g01505 463 SMART uim 117 136 IPR003903 -
Car07g01505 463 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Car07g01505 463 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 240 - -
Car07g01505 463 Gene3D Cysteine Rich Protein 155 217 - -
Car07g01505 463 MobiDBLite consensus disorder prediction 93 110 - -
Car07g01505 463 Pfam Protein DA1 307 428 IPR022087 -
Car07g01505 463 PANTHER PROTEIN DA1-RELATED 2 1 417 IPR045218 -
Car07g01505 463 CDD LIM_DA1 158 210 - -
Car07g01505 463 MobiDBLite consensus disorder prediction 20 71 - -
Car07g01505 463 MobiDBLite consensus disorder prediction 1 110 - -
Car07g01505 463 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 417 - -
Car07g01505 463 SMART lim_4 157 209 IPR001781 -
Car07g01505 463 MobiDBLite consensus disorder prediction 72 92 - -
Car07g01505 463 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Car07g01505 463 Pfam LIM domain 158 212 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01505 Car-Chr7 14741321 14746392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car07g01505 DA1-like 1.1e-56 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01505 - - gmx:100806605 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00552 08 4651953 4656512 Car07g01505 07 14741321 14746392 PCT