Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01443 ATGTCACgatcggcgccggcaccgtttttaaccaagacttatcagatggtggatgatccttttactgatgatgtgatttcttggagtgaaattggtaacacttttgttgtgtggaaacatgctgattttgctagagatttgcttccaaagtactttaagcacaacaatttctcaagctttgttcgtcaactcaacacctatGGGTTCCGAAAAATTGTCCCCGACAAATGGGAATTCGCCAACGAGAATTTCAAGCGAGGCCAGACGGAGCTGCTGCCAGCAATCAAGCGGCGGAAGACGGTGTCCCATTTGACCGCAGCAGGGAAATCCGGCGCCATCGGTGGAAACTCGGCGTCAAACTCCGGCGGCGAGGACATGGGTTCAACCTCAACAGGATCAATAGAACCAACGACCCAGTGCACTGATTTATCGCGCGAGAATGAGAAATTGAAAAAAGACAACGAGAAACTGGGTTGTGAGTTGGCACGTGCAAAGAAGCAGTGTGATGAGTTGGTAGGTTTTCTTCGTGACACTTTTAATGTGGGTCCGGATCAGATTAACCGCATCATTCGGGAAGGAACAAGTGGGTCCAGCCATGATACGGTGCGTTTTGATGATGACGATATTGCGGTAGGTGAATGTGAATGTGAAGAAGGAGAAAAATTAAAACTGTTTGGTGTTTGGTTGAAGAGTGAAGAAGGGAAGGAGAATGCGAAGATTACAAATGGTAAGAGTAATTGTCGCAAGAGAGGACGTGAAGACACAATTGGTGGTGCCAACAATGAGTTGAACACTGTTGTCTAG 804 0.3644 MSRSAPAPFLTKTYQMVDDPFTDDVISWSEIGNTFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQTELLPAIKRRKTVSHLTAAGKSGAIGGNSASNSGGEDMGSTSTGSIEPTTQCTDLSRENEKLKKDNEKLGCELARAKKQCDELVGFLRDTFNVGPDQINRIIREGTSGSSHDTVRFDDDDIAVGECECEEGEKLKLFGVWLKSEEGKENAKITNGKSNCRKRGREDTIGGANNELNTVV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01443 267 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 239 IPR027725 -
Car07g01443 267 SUPERFAMILY "Winged helix" DNA-binding domain 5 98 IPR036390 -
Car07g01443 267 MobiDBLite consensus disorder prediction 112 140 - -
Car07g01443 267 Pfam HSF-type DNA-binding 9 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g01443 267 Gene3D - 2 100 IPR036388 -
Car07g01443 267 MobiDBLite consensus disorder prediction 108 140 - -
Car07g01443 267 ProSitePatterns HSF-type DNA-binding domain signature. 48 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g01443 267 SMART hsfneu3 5 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g01443 267 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 239 - -
Car07g01443 267 Coils Coil 140 167 - -
Car07g01443 267 Gene3D - 136 174 - -
Car07g01443 267 PRINTS Heat shock factor (HSF) domain signature 9 32 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g01443 267 PRINTS Heat shock factor (HSF) domain signature 47 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g01443 267 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01443 Car-Chr7 13740743 13746091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01443 3 237 HSF AT4G36990 54.400 1.91e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car07g01443 HSF_DNA-bind 3.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01443 K09419 - gmx:100801897 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01443 07 13740743 13746091 Car07g01443 07 13740743 13746091 ECH
Car08g00501 08 4222227 4224175 Car07g01443 07 13740743 13746091 PCT