Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01439 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATCCCATGGGACGTTGAAACTGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTGGAAGATTGCATTGTTATGAAGGAACGGTCAACTGGCCGGTCTCGTGGTTTTGGATATGTCACATTTGCATCAGTGGATGATGCTAAGAATGTGCTATCCAGTGAACATAGTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCAGAATCTTTGTGGCCAGGATTGCACCATCAGTAACAGAAGCAACTTTTAGGAGTCATTTTGAGAAGTATGGTGAGATAACAGATTTATACATGCCAAAGGACCAAGGATCAAAAACACATAGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAACTTGATGAAAGAAACCCATGAACTAGGAGGTTCTGATGTAGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACTAGAACGTCACAAGCAGGATATGGTGCATATAATTCATATATTTCTGCATCGACGACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATTATCCCAGTTCAATTTATGGAAGAGGAGAACCTGTTCGTGGAATGTGCAAAAAGATTTTTGTTGGCCGTCTTCCCCCTGAGGCAACCACTGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAAGAGATCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCGGAAGATGGTGTTGCAGAACGTGTCTCTCGAAGATCTCATGAGATTTGTGGACACGAGGTTGCCATAGATACAGCCACACCTCTTGATGAGGCAGGGCCCAGTAGGAATACTATGTTGAATAGCGTGGATTCTTTCAGAGGATATGGCGGTCCTGTGAGGCCTTATGAGAGAATGTACGATAGCCTGGACTACGATGATTGGAGTTATGGAGTTGCTAGCAGAAGACCACCACCATCAAGAGCTGATTGGAGGTATAGACCATACTAG 1101 0.4369 MEQRKLVVLGIPWDVETEGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNVLSSEHSLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEATFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASADSVENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTRTSQAGYGAYNSYISASTTRYAALGAPTLYDYPSSIYGRGEPVRGMCKKIFVGRLPPEATTEDLRLYFGRFGHILDVYIPRDVKRSGHRGFGFVTFAEDGVAERVSRRSHEICGHEVAIDTATPLDEAGPSRNTMLNSVDSFRGYGGPVRPYERMYDSLDYDDWSYGVASRRPPPSRADWRYRPY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01439 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 286 IPR000504 GO:0003723
Car07g01439 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Car07g01439 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Car07g01439 366 Gene3D - 1 83 IPR012677 -
Car07g01439 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 305 IPR000504 GO:0003723
Car07g01439 366 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 366 - -
Car07g01439 366 SMART rrm1_1 230 301 IPR000504 GO:0003723
Car07g01439 366 SMART rrm1_1 5 76 IPR000504 GO:0003723
Car07g01439 366 SMART rrm1_1 93 164 IPR000504 GO:0003723
Car07g01439 366 SUPERFAMILY RNA-binding domain, RBD 89 189 IPR035979 GO:0003676
Car07g01439 366 SUPERFAMILY RNA-binding domain, RBD 229 328 IPR035979 GO:0003676
Car07g01439 366 Gene3D - 84 198 IPR012677 -
Car07g01439 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Car07g01439 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Car07g01439 366 Gene3D - 227 309 IPR012677 -
Car07g01439 366 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Car07g01439 366 PANTHER OS01G0945800 PROTEIN 3 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01439 Car-Chr7 13695791 13702589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01439 6 288 Eukaryotic Initiation Factors Gene Family AT3G16380 21.724 7.75e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01439 K14411 - gmx:100795240 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01439 07 13695791 13702589 Car07g01439 07 13695791 13702589 ECH