Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01412 ATGATGGCTGTCAACCGAAAGGATATGGATCGGATCAAAGGCCCATGGAGCCCAGAAGAAGATGATGCCTTACAGAAACTCGTTGAAAGACAGGGGCCCAGAAACTGGTCACTCATCAGCCGTGCCATTCCAGGCCGCTCTGGAAAATCTTGCAGGCTTCGTTGGTGTAACCAGCTTTCACCTCAAGTTGAACATCGGGCTTTTACACCTGAAGAAGATGATATCATTATCAGAGCCCATGCCCGCTTCGGTAATAAATGGGCCACAATAGCCCGATTACTTTCCGGTCGAACTGATAACGCAATTAAAAACCACTGGAACTCGACGCTGAAGCGGAAGTGTTCATCCATCTTCTCAGCCGACGATCCCGCTTTTAATCCTCAACCACTTAAACGCTCGGCTAGCGTCGGCGCGCCGGGAAGTCCTTCCGGCTCCGATTTAAGCGATTCCGGAGCAGAAGGTGTCGTCGGAACCTTCGCCGGAGCTTCTCCTACGCACGTATTTCGTCCTGTGCCGGTTCGAATGGTGGCGGAAACGGCATCGTCAGAGCAAGACGACGGACCTCCGACTTCGCTTTCGCTTTCTCTTTCTCTTCCCGGCGTGGATTCTTCGGATGTAATGAATCGCGCTGCGGCGGTTCCGATTAATGCTTCGCCGATGAGTTCTGTAACGGCTTCTGTGGCGGCGAAAGTTTCACAGGAAGTTGGGATGGGAGCGTTGAATATGAGTGGGGAGTTGATGGCGGTTATGCAAGAGATGGTGTCGATAGACTCAGAAACGTTTCAGCTAAACCAATTGGGATTAACAGGGTTGATTCTTAATTTGGTTGATTAG 834 0.5108 MMAVNRKDMDRIKGPWSPEEDDALQKLVERQGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDIIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFSADDPAFNPQPLKRSASVGAPGSPSGSDLSDSGAEGVVGTFAGASPTHVFRPVPVRMVAETASSEQDDGPPTSLSLSLSLPGVDSSDVMNRAAAVPINASPMSSVTASVAAKVSQEVGMGALNMSGELMAVMQEMVSIDSETFQLNQLGLTGLILNLVD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01412 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Car07g01412 277 PANTHER MYB PROTEIN-RELATED 2 261 - -
Car07g01412 277 CDD SANT 15 57 IPR001005 -
Car07g01412 277 MobiDBLite consensus disorder prediction 128 152 - -
Car07g01412 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Car07g01412 277 CDD SANT 67 110 IPR001005 -
Car07g01412 277 Gene3D - 66 128 - -
Car07g01412 277 Pfam Myb-like DNA-binding domain 16 73 - -
Car07g01412 277 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Car07g01412 277 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Car07g01412 277 SMART sant 64 112 IPR001005 -
Car07g01412 277 SMART sant 12 61 IPR001005 -
Car07g01412 277 Gene3D - 12 64 - -
Car07g01412 277 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Car07g01412 277 PANTHER MYB TRANSCRIPTION FACTOR 2 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01412 Car-Chr7 13269146 13270155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01412 6 261 MYB Transcription Factor Family AT4G37260 50.865 2.05e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g01412 Myb_DNA-bind_6 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01412 K09422 - gmx:100806145 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01412 07 13269146 13270155 Car08g00465 08 3908298 3909269 ECH
Car07g01412 07 13269146 13270155 Car07g01412 07 13269146 13270155 ECH
Car07g01412 07 13269146 13270155 Car08g00465 08 3908298 3909269 PCT