Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01352 ATGGGTCTTGATCAAGATGCTAGTAGTAACAACTCTGGCCTTCCACTTATTCTTGGTTTAGCTCTCACACTTTCTCAACAAGAAACCATCACTCCACCACCATCCAACAAAATCACAAAGCCTTTTAATAATTCCTCCAATTTCATCACTTGTTCAACAAGTAATAATCATAATAACAACCTTCAAGCTGAATTACCATCTCTAACTTTGGGTTTATCTTACCCCAAAAATGTTAATAACAATAAAGTTTATTATGAAGACCCTCTTGATTTTTCTACACAAACTTCACCTCATCACAGTGTTGTTTCATCCTTCTCTAGTGGAAGGGTCAAGAGAGAAAGAGATGTTAGCAGTGAAGAAGTTGAAGCAATAGAGAGAGTTTGTTCAAGAGTCAGTGATGAAGAAGAAGATGCTGTTGCTGCTAGGAAGAAACTTAGGCTTACCAAAGATCAATCTGCTATGTTAGAAGAAAACTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGAGAATTAAATCTACTCCCTCGTCAGGTTGAGGTGTGGTTCCAGAACCGAAGAGCTAGAACAAAGCTGAAGCAAACAGAGGTGGATTGTGAGTTTCTAAAGAAATGTTGTGAAACATTAACGGATGAGAATAGGAGGCTACAAAAAGAGGTTCAAGAATTGAAGGCACTGAAATTAACACAACCTTTGTATATGCCTATGCCAGCTGCTACACTTACCATGTGTCCCTCTTGTGAGAGGCTtggtggtgttagtggtggtggtgCTTCCAATAAAACCACTTTCTCTATGGCTCCTAAGCCTCACTTTTACAATCCCTTCACCAATTCTTCTGCAGCGTGTTGA 867 0.3806 MGLDQDASSNNSGLPLILGLALTLSQQETITPPPSNKITKPFNNSSNFITCSTSNNHNNNLQAELPSLTLGLSYPKNVNNNKVYYEDPLDFSTQTSPHHSVVSSFSSGRVKRERDVSSEEVEAIERVCSRVSDEEEDAVAARKKLRLTKDQSAMLEENFKQHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLTQPLYMPMPAATLTMCPSCERLGGVSGGGASNKTTFSMAPKPHFYNPFTNSSAAC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01352 288 Coils Coil 204 234 - -
Car07g01352 288 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Car07g01352 288 SUPERFAMILY Homeodomain-like 142 206 IPR009057 -
Car07g01352 288 Gene3D - 148 194 - -
Car07g01352 288 SMART HOX_1 140 202 IPR001356 GO:0003677
Car07g01352 288 CDD homeodomain 142 199 IPR001356 GO:0003677
Car07g01352 288 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355|GO:0043565
Car07g01352 288 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Car07g01352 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 55 288 - -
Car07g01352 288 PANTHER - 55 288 - -
Car07g01352 288 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Car07g01352 288 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01352 Car-Chr7 12571053 12572627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01352 1 288 Homeobox Transcription Factor Family AT4G37790 57.756 1.69e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car07g01352 Homeodomain 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01352 K09338 - gmx:100795135 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00400 08 3265215 3267181 Car07g01352 07 12571053 12572627 PCT