LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01347	ATGCACATCCTTCCATCTCTCCTCATCCTCTTCCTCTCACTCCAATTAGTTTCCACAACCTACATCTCTGAACACAAAACTTTACTCTCATTCAAATCTTCCTCCATCACCGACGACCCAACCCACTCCCTCATCTCATGGAACTCATCCACAACACACTGTTCCTGGCACGGCATCACTTGTACTGGTCCCCACCGCCACGTCACTTCTATCGACCTCTCTTCACTCACCCTCACTGCCACTCTCTCCGACCACCTCTCCAACCTCCCTTTTCTCTCCAATCTCTCCCTCGCTGATAACAAATTCTCCGGCCCCATTCCTCCTTCTTTTTCATCTCTTTATTCGCTCCGTTTCCTTAACCTTTCCAACAATGTCTTCAACGGTACTTTCCCTTCTCAGCTCTCCCGTCTCTCCAATCTTCATGTTCTTGATCTTTACAATAATAACATGACCGGTACTCTTCCTCTTTCTGTTACTCGCATGCAAAATCTCCGGCATTTGCATCTCGGTGGAAATTTTTTCACCGGAAAAATTCCGCCGGAGTATGGAACCTGGCCTCATCTTGAGTATCTTGCTGTCTCCGGCAATGAGCTTTCTGGACCCATTCCGCCGGAGATAGGTAACCTAACTTCCCTCCGTGAGCTTTACATTGGTTACTATAATACCTACGACGGTGGTATTCCGCCGGAGATTGGTAACCTGTCGGCGATGGTGAGGTTCGACGCTGCTTACTGTGGATTAACCGGCGAGATTCCGCCGGAGCTTGGAAAGCTTCAGAACTTGGATACACTGTTTCTTCAAGTGAATGCGCTTTCTGGGTCTCTTACGCCGGAGCTCGGAAACCTAAAGAGCTTGAAATCAATGGATTTGTCTAACAACGCGTTCGACGGTGAGGTTCCGGCGAGTTTTGCAGAGCTGAAGAATCTTACTCTTTTGAATCTTTTCAGAAATAAGCTTCACGGAGCTATACCTGAGTTTATCGGAGAGATGCCAGCGCTTGAAGTGTTGCAGATTTGGGAAAACAACTTCACCGGAAGCATTCCTCAGAGTTTAGGGAAAAATGGAAAGCTTACACTTGTTGATGTTTCTTCAAACAAATTAACCGGTTCGCTACCACCTTATATGTGTTTCGGAAACAAACTTCAAACTTTGATAACTTTAGGGAATTTCCTATTTGGTCCCATTCCAGATTCACTTGGAAAGTGTGAGTCTTTGAGTAGGATTCGTATGGGTGAAAATTTTCTTAATGGGTCAATTCCAAAAGGGCTTTTTGGTCTTCCACAACTCACACAAGTTGAACTTCAAGATAATCTTCTATCTGGTGAGTTTCCTCAACCTGTTTCAATGTCACCAAATCTTGGTCAAGTTACTCTTTCCAACAACAAGCTTTCTGGGCCTTTACCATCTTCCATTGGAAACTTCACCAGTGTGCAAAAGCTTCTCCTTGATGGAAACCAGTTCACAGGTAAAATCCCTTCTGAGATTGGAAAGTTGCAACAGCTTTCAAAGATTGATTTTAGTCATAACAAGTTTTCGGGTCCTATTGCACCTGAGATTAGTCATTGCAAGCTTCTAACTTTCGTTGATCTTAGCCGTAATGAACTTTCTGGTGAGATTCCAAATGAAATCACTGGTATGAGGATATTGAATTACCTTAACCTTTCAAGGAACCATCTTGTTGGTACTATTCCAGGTTCTATTGCTTCAATGCAAAGTTTAACTTCTGTTGATTTTTCATACAACAATCTCACTGGTTTGGTTCCTGGTACTGGTCAATTTAGTTACTTTAACTACACTTCCTTCCTTGGTAACCCTGAACTTTGTGGTCCTTATTTGGGTCGTTGCAAAGATGGGATTGTTAATGGTCCTCATCAACCTCATGTTAAAGGTCCACTCTCTTCAACTGTGAAGCTTTTGCTTGTAATTGGTTTGCTTGCTTGCTCCACTTTATTTGGTGTTGCTACAATATTCAAAGCTAGATCTTTGAAAAAGGCTAGTAAAGCTCGTGCATGGAAATTAACTGCGTTTCAACGGTTGGATTTCACCGTTGATGATGTTCTTGATTGTTTGAAAGAGGATAACATTATAGGAAAAGGTGGCGCTGGCATTGTTTACAAAGGTGATATGCCTAATGGAGATCTTGTTGCTGTGAAAAGGTTACCAGCAATGAGTAGAGGCTCTTCTCATGATCATGGTTTTAATGCTGAAATTCAAACTTTAGGGAGAATTAGACACAGACACATTGTTAGATTACTGGGTTTCTGTTCAAACCATGAGACAAATCTATTGGTTTATGAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTTCATGGTAAGAAAGGAGGTCATTTGCATTGGGATACAAGGTATAAAATTGCTGTGGAAGCTGCAAAGGGTCTTTGCTATTTACACCATGATTGTTCACCACTTATTGTTCATCGCGATGTGAAATCAAACAATATCTTACTTGATTCAAGTTTTGAAGCACATGTTGCTGATTTTGGACTTGCTAAGTTCTTGCAAGATTCTGGAACGTCTGAGTGCATGTCTGCTATTGCTGGTTCTTATGGATACATAGCTCCAGAATATGCCTACACATTGAAAGTAGACGAGAAAAGTGATGTGTACAGCTTCGGGGTGGTACTATTAGAGCTCGTAGCAGGGAGAAAACCAGTTGGAGAATTTGGCGATGGTGTGGACATAGTTCAATGGGTGAGAAAAATGACTGATTCAAACAAAGAAGGTGTTCTAAAAGTTCTTGATCCAAGACTTCCCTCAGTTCCACTTCATGAGGTGATGCATGTGTTCTATGTAGCAATGTTATGTGTTGAAGAACAAGCTGTTGAGAGACCAACTATGCGTGAAGTTGTTCAAATGCTTACTGAGCTTCCTAAACCACCTACCTCAAAACATGTTGAAGATTTAACATTAACTATCACTGAATCACCCTCTTTGGCATCATCAAACAGTTTAGAGTCTCCATCTAAAGAACCTAAAGATCTTCTTAGCATATGA	3018	0.4188	MHILPSLLILFLSLQLVSTTYISEHKTLLSFKSSSITDDPTHSLISWNSSTTHCSWHGITCTGPHRHVTSIDLSSLTLTATLSDHLSNLPFLSNLSLADNKFSGPIPPSFSSLYSLRFLNLSNNVFNGTFPSQLSRLSNLHVLDLYNNNMTGTLPLSVTRMQNLRHLHLGGNFFTGKIPPEYGTWPHLEYLAVSGNELSGPIPPEIGNLTSLRELYIGYYNTYDGGIPPEIGNLSAMVRFDAAYCGLTGEIPPELGKLQNLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNAFDGEVPASFAELKNLTLLNLFRNKLHGAIPEFIGEMPALEVLQIWENNFTGSIPQSLGKNGKLTLVDVSSNKLTGSLPPYMCFGNKLQTLITLGNFLFGPIPDSLGKCESLSRIRMGENFLNGSIPKGLFGLPQLTQVELQDNLLSGEFPQPVSMSPNLGQVTLSNNKLSGPLPSSIGNFTSVQKLLLDGNQFTGKIPSEIGKLQQLSKIDFSHNKFSGPIAPEISHCKLLTFVDLSRNELSGEIPNEITGMRILNYLNLSRNHLVGTIPGSIASMQSLTSVDFSYNNLTGLVPGTGQFSYFNYTSFLGNPELCGPYLGRCKDGIVNGPHQPHVKGPLSSTVKLLLVIGLLACSTLFGVATIFKARSLKKASKARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGDMPNGDLVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVAGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPPTSKHVEDLTLTITESPSLASSNSLESPSKEPKDLLSI	1005

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01347	1005	Gene3D	Ribonuclease Inhibitor	217	377	IPR032675	-
	Car07g01347	1005	Gene3D	Transferase(Phosphotransferase) domain 1	768	980	-	-
	Car07g01347	1005	Gene3D	Phosphorylase Kinase; domain 1	656	767	-	-
	Car07g01347	1005	MobiDBLite	consensus disorder prediction	982	997	-	-
	Car07g01347	1005	ProSiteProfiles	Protein kinase domain profile.	690	964	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01347	1005	SUPERFAMILY	L domain-like	299	615	-	-
	Car07g01347	1005	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	812	824	IPR008271	GO:0004672\|GO:0006468
	Car07g01347	1005	SUPERFAMILY	RNI-like	70	392	-	-
	Car07g01347	1005	Pfam	Protein tyrosine and serine/threonine kinase	692	961	IPR001245	GO:0004672\|GO:0006468
	Car07g01347	1005	Gene3D	Ribonuclease Inhibitor	134	216	IPR032675	-
	Car07g01347	1005	Gene3D	Ribonuclease Inhibitor	23	133	IPR032675	-
	Car07g01347	1005	PANTHER	LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN	18	1001	-	-
	Car07g01347	1005	SUPERFAMILY	Protein kinase-like (PK-like)	684	961	IPR011009	-
	Car07g01347	1005	Pfam	Leucine rich repeat N-terminal domain	26	61	IPR013210	-
	Car07g01347	1005	SMART	serkin_6	690	961	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01347	1005	Gene3D	Ribonuclease Inhibitor	378	616	IPR032675	-
	Car07g01347	1005	Pfam	Leucine Rich Repeat	163	180	IPR001611	GO:0005515
	Car07g01347	1005	MobiDBLite	consensus disorder prediction	982	1005	-	-
	Car07g01347	1005	PANTHER	LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED	18	1001	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01347	Car-Chr7	12491347	12495671	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g01347	12	995	Receptor kinase-like Gene Family	AT5G65700	79.737	0.0	1580

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Car07g01347		PK_Tyr_Ser-Thr	3.9e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01347	-		-	gmx:100499646	1688.7