Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01344 ATGACTTCAATTGATGAATCGTGGACTAATTGGTTGTGTGATACGGAACCAGATGATTACAGTTTAATCAACCAATTAGACACAAACACAGACAATGTTAGTAATTTAGAGAGTAGTAACTTAGAGAGACCTTCCAAGTTACTCAAGAAAGGTTCTTCTTCCACTTACTCATACATTCTTTCGTTTGAAAATGAGAATCCACAACCAATTAAAGTTGAACAAGCCTTGAATCCAAAAACCAAAGTAATGAACTCAAAGAATGAACACAAACGAGTCAATATTCAAGAGATTAACAAGAAAAACTATTCATTTACCAGATCTACTACTAATCACACACCAGATCATATAATTGCTGAGAGAATAAGGAGAGAAAAAATTAGTCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAAATCTAAAAAAGATGGATAAGGCCTCTGTGTTAGGTGATGCTATAAAGTATGTGAAGCAGTTGAAGGATCAAGTGAAAGTGTTGGAGGAACAAAGTAAAAGGAAACAAAGTGTGGAATCGATTGTGGCTGTGAAGAAATTGTCTCAACTTTTTGTGGATGAAGATGTTTCGGACACTTCTTCATATTGTTGTAATGGAAACTCTGATGAAACCTTAAAAAGAAATCTGTTGCTGCCAGAAGTTGAAGCTAGATTGTCGGGGAAGAGTGTGATGATTCGAATCCTTTGTGAGAAAGATAAGGTTGTGATGGTGAATGTATATAGAGCGATAGAGAAATTTCATTTATCCGTAATCAATGCGAGTTCGTTTTCATTTGGTTCCTCTGTTTTAGCCATAACCATCATTGCTCAGATGGAGGATGAGTTCAATATAAGCGTCCAGAAACTGGCAAAAAACCTGAGTATTGAACTGGAGAAATTGAAGGAGTGGTAA 906 0.3598 MTSIDESWTNWLCDTEPDDYSLINQLDTNTDNVSNLESSNLERPSKLLKKGSSSTYSYILSFENENPQPIKVEQALNPKTKVMNSKNEHKRVNIQEINKKNYSFTRSTTNHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKQLKDQVKVLEEQSKRKQSVESIVAVKKLSQLFVDEDVSDTSSYCCNGNSDETLKRNLLLPEVEARLSGKSVMIRILCEKDKVVMVNVYRAIEKFHLSVINASSFSFGSSVLAITIIAQMEDEFNISVQKLAKNLSIELEKLKEW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01344 301 Coils Coil 149 176 - -
Car07g01344 301 PANTHER BHLH TRANSCRIPTION FACTOR 5 43 - -
Car07g01344 301 PANTHER BHLH TRANSCRIPTION FACTOR 38 297 - -
Car07g01344 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Car07g01344 301 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 38 297 - -
Car07g01344 301 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 43 - -
Car07g01344 301 Gene3D - 103 175 IPR036638 GO:0046983
Car07g01344 301 Pfam Helix-loop-helix DNA-binding domain 115 160 IPR011598 GO:0046983
Car07g01344 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 172 IPR036638 GO:0046983
Car07g01344 301 SMART finulus 116 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01344 Car-Chr7 12454646 12458578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01344 99 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.187 1.77e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g01344 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01344 - - cam:101494527 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01344 07 12454646 12458578 Car07g01344 07 12454646 12458578 ECH
Car08g00388 08 3150594 3153128 Car07g01344 07 12454646 12458578 PCT