Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01343 ATGGAGGAAATCAACAACACACCAATGAACACATCAGAAACTAACAAATGGTTATCTGATTTGGAAATTGATGAATACAATTTATTTCCTGAGGAAAGCAACCTGAATTTCCTTGATGCTGATGAGGATGAGTTTGTTTCACATGACATAGCTAGTGTCTTTGAGGAACAGACCAAACAACAATGTTTGACTTCAGAGTGTACTTCCACAACTCTCAGCAACTCATTTACTGATGAAACATGTTTTGAGTCTTTTGACTTTGATTTTGATTTTGAGAGACAAACCAAACAGCTGAAAACAATTGATAATGACAATAACATCATTGACACCTTTTCAACAAAAGTTTCTTCATCGTCATCTAACTCATCTTTTCAATCTCAGATTCTTTGTTTTGACCCTTCCATAAACACACAACAGAACGAGGTAGTGTCAGTGTCTCAACCCCAATTGGGAACAAAAGGGTCCTCAAAAAATCAAAACTTGGAATCACAAAACAAGAGGTCTCGAGCTAACTCTCATGATCATATCATGGCCGAGAGATTGCGAAGAGAGAAACTCAGCGTTAGCTTCATTGCTCTTGGAGCTCTCATTCCTGGCCTAAAGAAGATGGACAAAGCTACTGTATTAGCAGATGCTATCAAATATGTGAAAGAGCTTAAAGAACGTTTGGAAGTATTGGAAGAACAGAGGAATAAAAGAAAGGCAGATTCAGTGGAGAAACAGACGAAAGCAGATCTGTGTAGCGATGATGAGTACTCATCATCTGATGAAAGCATTGAAGGTGCTGCAGAGTCACAATTCCAAGTGGATGCAAAGGTGTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAAGAGATACTGATTAG 891 0.3659 MEEINNTPMNTSETNKWLSDLEIDEYNLFPEESNLNFLDADEDEFVSHDIASVFEEQTKQQCLTSECTSTTLSNSFTDETCFESFDFDFDFERQTKQLKTIDNDNNIIDTFSTKVSSSSSNSSFQSQILCFDPSINTQQNEVVSVSQPQLGTKGSSKNQNLESQNKRSRANSHDHIMAERLRREKLSVSFIALGALIPGLKKMDKATVLADAIKYVKELKERLEVLEEQRNKRKADSVEKQTKADLCSDDEYSSSDESIEGAAESQFQVDAKVSXXXXXXXXXXXXXXXXXERDTD 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01343 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 242 IPR036638 GO:0046983
Car07g01343 296 Coils Coil 209 236 - -
Car07g01343 296 PANTHER BHLH TRANSCRIPTION FACTOR 10 274 - -
Car07g01343 296 Coils Coil 292 294 - -
Car07g01343 296 MobiDBLite consensus disorder prediction 241 266 - -
Car07g01343 296 MobiDBLite consensus disorder prediction 144 178 - -
Car07g01343 296 Pfam Helix-loop-helix DNA-binding domain 175 219 IPR011598 GO:0046983
Car07g01343 296 SMART finulus 176 225 IPR011598 GO:0046983
Car07g01343 296 Coils Coil 273 274 - -
Car07g01343 296 MobiDBLite consensus disorder prediction 144 166 - -
Car07g01343 296 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 10 274 - -
Car07g01343 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Car07g01343 296 Gene3D - 158 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01343 Car-Chr7 12444321 12447326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01343 153 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.000 1.48e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g01343 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01343 - - mtr:MTR_0011s0210 228.024