Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01338 ATGCCAGTTCCACTTGCCCCTTATCCAACTCCACCACCAGCTCCATATACACCACCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTTTAGTTTATCCAGTTGGAGCTACTTCTGTGTGTTGTGCTGTTTGCAATGCTGTCACAGCAGTTCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGCGGCGGCTGCCATACTTTACTCATGTACATCCGCGGAGCGACAAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTAGAAGCAAATCAGGTGGCACATGTCAACTGTGGTAACTGCAGGATGCTACTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 444 0.4752 MPVPLAPYPTPPPAPYTPPPTNGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01338 147 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Car07g01338 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Car07g01338 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Car07g01338 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Car07g01338 147 PANTHER PROTEIN LOL1 1 144 - -
Car07g01338 147 MobiDBLite consensus disorder prediction 1 20 - -
Car07g01338 147 PANTHER PROTEIN LSD1 1 144 IPR040319 -
Car07g01338 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Car07g01338 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Car07g01338 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01338 Car-Chr7 12353525 12356024 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Car07g01338 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01338 - - mnt:21406053 264.618