Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01316 ATGGCACTCTCTCTTTTGTATCTTGTTCTCCTTGCCACCTTCCTTTTCATGCAGACTCTAGCAGATACTTCATGCACCGATTGTTTTGTTCAATCTCGTGCATCATATTACCCAAATTCTGACGAAAATGGCACAGATGCTGGTGCATGTGGATTCGGTTCCTTTGGTGCTACCATTAATGGTGGGGATGTATCGGCTGCATCTAATCTTTATCGAGATGGAGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTGCCAACAGCGTTTATTGCTCAAGCAACGGTGTCACTATAGTTTTAACTGACCAAGGCTCAGGTGATAACACTGACTTCATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCAGACCAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGTGTAGTCAATATTGAATACAGACGTGTTTCATGTAGCTACCCAAATAAAAACATTACTATTAAGATTGATGAAAGCAGCAGCAACCCTCATTACTTGGCTTTTGTCCTATGGTATCAGCAAGGAAAGAGAGACATAACTGCTGTGCAGCTCTGCGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGGATCACGGTGCAGTCTGGACAACTACCTCTCCACCGAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTACTGAAGATGGAGAAGATACATGGGTTGTTCCGGTTAACAACATACCAGAAGACTGGAAGGCTGGAGACACATATGACGCAGGGGTACAAGTAGACCAGTAG 765 0.451 MALSLLYLVLLATFLFMQTLADTSCTDCFVQSRASYYPNSDENGTDAGACGFGSFGATINGGDVSAASNLYRDGVGCGACYQVRCANSVYCSSNGVTIVLTDQGSGDNTDFILSQRAFGGMAQTKDAAASLLALGVVNIEYRRVSCSYPNKNITIKIDESSSNPHYLAFVLWYQQGKRDITAVQLCETQNFVCKLLDRDHGAVWTTTSPPSGPLSLRMLFSTEDGEDTWVVPVNNIPEDWKAGDTYDAGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01316 254 Pfam Expansin C-terminal domain 153 234 IPR007117 -
Car07g01316 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Car07g01316 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Car07g01316 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Car07g01316 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 6 253 - -
Car07g01316 254 SUPERFAMILY PHL pollen allergen 151 247 IPR036749 -
Car07g01316 254 Gene3D - 148 252 IPR036749 -
Car07g01316 254 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Car07g01316 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Car07g01316 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Car07g01316 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Car07g01316 254 PANTHER EXPANSIN-B3 6 253 - -
Car07g01316 254 Gene3D - 17 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01316 Car-Chr7 12095232 12097337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01316 9 250 Expansin Gene Family AT4G17030 44.672 2.47e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01316 - - gmx:100794009 442.965