Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01272 ATGTACGGCCACAATACTTTCGATTCCGAATTTGCCCTTTTAGAGTCTATTCGCCGCCACTTATTAGGCGAGTCCGAAACAATATTCGGAGCTCCAACAACTTCTTCGGGTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGTTTATACCCATGTTTGACTGATAATTGGGGGGATTTACCGCTCAAAGAAGACGACTCTGAAGATATGGTGCTCTACGGTGTCCTCCGAGATGCTGTAAACGTTGGGTGGGTCCCGTCTCTCGAAGTCGGGTCACCCGAAAGTATTTCATCGGATTTTCTACCGGAAATTAAGGTGAAAACAGAGCCGGGTGTCATGCCGGTAGAAAATACTCCCGCGGTGTTGTCTACGGCGGTAAAGGTGGTTTCAGACGGACCAAAAGCTGCTCCGGCGAAAGGGAAACACTACCGCGGTGTTAGACAACGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGATCCAGCGAAGAACGGAGCTAGGGTTTGGCTCGGAACATTCGAGACTGCAGAAGATGCGGCGTTGGCTTACGATAAAGCTGCGTATAGGATGAGAGGATCGAGAGCTTTGTTGAATTTTCCTCTTCGGGTTAACTCCGGCGAACCCGACCCGGTTAGAGTGGCTTCGAAACGTACTTCGCCGGAACGTTGTTCTTCTTCGTTGTCGGAGAGTAGTTCGCCGGCGAAGAGGAGGAAGGTAGTGACAGCTCAGAGTGGATTAAAAACAGGTCAAGTTGCACAATGTACACGTGGCGAACAGTTATTGGTTTCTTAA 798 0.5025 MYGHNTFDSEFALLESIRRHLLGESETIFGAPTTSSGNTRVFSRSSSFSSLYPCLTDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEVGSPESISSDFLPEIKVKTEPGVMPVENTPAVLSTAVKVVSDGPKAAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDKAAYRMRGSRALLNFPLRVNSGEPDPVRVASKRTSPERCSSSLSESSSPAKRRKVVTAQSGLKTGQVAQCTRGEQLLVS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01272 265 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Car07g01272 265 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Car07g01272 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 31 245 - -
Car07g01272 265 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Car07g01272 265 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Car07g01272 265 MobiDBLite consensus disorder prediction 220 246 - -
Car07g01272 265 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Car07g01272 265 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Car07g01272 265 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Car07g01272 265 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Car07g01272 265 PANTHER DNA-BINDING DOMAIN 31 245 IPR044808 GO:0003700|GO:0009873
Car07g01272 265 MobiDBLite consensus disorder prediction 211 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01272 Car-Chr7 11591410 11592776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01272 9 264 AP2-EREBP Transcription Factor Family AT4G17500 55.282 1.47e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g01272 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01272 K09286 - gmx:100803653 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01272 07 11591410 11592776 Car07g01272 07 11591410 11592776 ECH