Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01266 ATGATGCTTATTCAAAAGGAAGACTTGAGTTTGAGTCTAAGTTTGAACTTCCTTCACAAATTCTCTTCCAATTCCTCCGATCGAAACTCCGAAACGTTAACACGAGGAATCGACGTGAATCGGTTACCATCAACGGTTATTGACTGCGAAGAAGAGGAAACAGGAGTTTCGTCTCCAAACAGCACAGTTTCGAGTGTTAGTGGAAAACGAAGCGAGAGAGATGACGTGGACAGAGCGTGTTCAGGAGGGAATATTAGTGATGAAGAAGACGCTGAAACCGCTAGGAAAAAGCTTAGACTCTCTAAAAACCAGTCAGCTATTCTCGAAGAAACTTTCAAACAACACAATACTCTCAATCCCAAACAAAAGTTGGCACTTGCAAAGCAGCTTGGCCTTCGACCAAGACAAGTTGAAGTTTGGTTCCAAAATAGAAGAGCTAGGACGAAGCTGAAGCAAACGGAAGTTGATTGTGAGGTGTTGAAAAGGTGCTGTGAAAATCTAACGGATGAAAATAGGAGATTACAGAAGGAAGTTCAAGAGCTTAGAGCACTCAAACTTTCCCCTCAGTTTTACATGCAAATGGCTCCACCTACCACGCTTACTATGTGCCCGTCTTGTGAGCGCGTCGCTGTTCCATCCCATCCTATGGCCCAACCCCGTACTCGCCCCATACATATTGGCCCATGGGCTTCTTCTGCTCCACTTGCGCACCGCCCGTTTGAATTTGATGTTTTCCGTCGTTGA 744 0.4516 MMLIQKEDLSLSLSLNFLHKFSSNSSDRNSETLTRGIDVNRLPSTVIDCEEEETGVSSPNSTVSSVSGKRSERDDVDRACSGGNISDEEDAETARKKLRLSKNQSAILEETFKQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMAPPTTLTMCPSCERVAVPSHPMAQPRTRPIHIGPWASSAPLAHRPFEFDVFRR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01266 247 Pfam Homeobox associated leucine zipper 151 185 IPR003106 GO:0006355|GO:0043565
Car07g01266 247 SMART halz 151 194 IPR003106 GO:0006355|GO:0043565
Car07g01266 247 MobiDBLite consensus disorder prediction 50 92 - -
Car07g01266 247 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 24 237 - -
Car07g01266 247 MobiDBLite consensus disorder prediction 68 92 - -
Car07g01266 247 Coils Coil 150 187 - -
Car07g01266 247 Pfam HD-ZIP protein N terminus 24 74 IPR006712 GO:0005634
Car07g01266 247 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Car07g01266 247 PANTHER - 24 237 - -
Car07g01266 247 PRINTS Lambda-repressor HTH signature 122 131 IPR000047 GO:0003677
Car07g01266 247 PRINTS Lambda-repressor HTH signature 131 147 IPR000047 GO:0003677
Car07g01266 247 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Car07g01266 247 Gene3D - 99 149 - -
Car07g01266 247 Pfam Homeodomain 95 149 IPR001356 GO:0003677
Car07g01266 247 CDD homeodomain 95 152 IPR001356 GO:0003677
Car07g01266 247 SUPERFAMILY Homeodomain-like 87 152 IPR009057 -
Car07g01266 247 SMART HOX_1 93 155 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01266 Car-Chr7 11526963 11528435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01266 2 246 Homeobox Transcription Factor Family AT5G47370 57.801 6.07e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car07g01266 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01266 K09338 - gmx:100813367 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00320 08 2552602 2554829 Car07g01266 07 11526963 11528435 PCT