Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01258 ATGGCACCAAGAAAAGATGGATCAACCAAAAAACCAATGAATAGAGGAGCATGGACTCCAGTGGAAGATCAAAAGCTAGCTCAATGCATTCAAACTCATGGTGCTAAGAAGTGGAAAACTGTTGCAGATAAATCAGGTTTAAATAGGTGTGGAAAGAGTTGTAGGCTAAGATGGTTGAACTATCTAAGACCCAATATCAAGAGAGGGAACATATCAGATGAAGAGGAGGATTTGATAATTAGGCTTCATAAACTTCTTGGAAACAGGTGGTCTTTGATAGCGGGGAGACTTCCGGGACGAACAGACAATGAAATCAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCCAGTCACATAGAGGAAAAACCAGAAACTTCCACAACACAAGAAACTATAGCCCAGAACAATATTGTTGAGGACATTGTCATGTTAGAGAGTAAAGACTCAATTAGTGGAAGTGTTAATTCGGATGTTAGCTTTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGGATCATATGGGTTTGATTGGGTGAATAGGTACTTGGAATTTGATCCGATTCAGTTTCCTGAGAACACAAAAAGATCTGAGTAA 600 0.385 MAPRKDGSTKKPMNRGAWTPVEDQKLAQCIQTHGAKKWKTVADKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTTQETIAQNNIVEDIVMLESKDSISGSVNSDVSFDVNEFLDFSTEGSYGFDWVNRYLEFDPIQFPENTKRSE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01258 199 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Car07g01258 199 CDD SANT 72 113 IPR001005 -
Car07g01258 199 Gene3D - 15 67 - -
Car07g01258 199 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car07g01258 199 Gene3D - 71 140 - -
Car07g01258 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car07g01258 199 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Car07g01258 199 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Car07g01258 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Car07g01258 199 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Car07g01258 199 SMART sant 14 64 IPR001005 -
Car07g01258 199 SMART sant 67 115 IPR001005 -
Car07g01258 199 CDD SANT 17 62 IPR001005 -
Car07g01258 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 190 - -
Car07g01258 199 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01258 Car-Chr7 11418407 11420184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01258 15 163 MYB Transcription Factor Family AT5G40330 51.678 3.10e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g01258 Myb_DNA-binding 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01258 K09422 - gmx:100799575 288.5