Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g01248 | ATGGAAAGACACAAATGCAAATTATGTTCAAGAACATTTGGTAATGGAAGAGCACTCGGTGGACACATGAAGGCTCATCTTGCTATAGCTAAGCCTAAAATACCATTAATCACTCAatctgcaacttcattctcatcattttcatcttcaGAATCCGaacaagaacaacaacaacaagaagaaaaaGCTTTGGTTTATGTGTTGAGAGAGAATCCTAAAATGAGTTACAAAATTGCAGATCCTAAATTTACTGAGTCTTTGATTGTTGTTCAAGATAGAGAGAGTGAGACTGAGTCAAAGAACCCTTTAACTCGTCAACGATCAAAACGAAACAGAAAAAATAACATCAACAACAACGATTTTCAATCAAAGAAACCAAAGATGAGTGGTTTCATCTTTTCAACACCAACACCACCGTTCAATGAACAAGAACCTGTTAGCTCTGTTTCTAATACTTCCCCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTGTCAAGAGACAAATGGAGTAGAGAGAGAAACAACATTAACAATGTGTTTgaagaacaagaacaagaacaagaagaaTCAAAGGTTAAGAGAGTTCGTGGGAAACATTTGTGTGAAAATTGTGGGAAAACATTTCGATCTTCAAGAGCACTGGGTAGTCATAAAAGTGTTTGTTGTCGCAACCAAGACCAAGTGAAGAATACTAACAATGGTGATAAGATTTTTGAATGTCCATTTTGTTCGAAGGTGTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTCATTTCTTCCTCGTCTAATTCCAATGCTAATAATGTTAATCCTTCGGTTAGTTTCAAAGAAAGTTTCATAGATCTCAATTTGCCTGCTCCACTTGAAGTAGAAGATGACGATGACGATCTTAGTGTTGTTTCTGATGCCTAA | 927 | 0.3376 | MERHKCKLCSRTFGNGRALGGHMKAHLAIAKPKIPLITQSATSFSSFSSSESEQEQQQQEEKALVYVLRENPKMSYKIADPKFTESLIVVQDRESETESKNPLTRQRSKRNRKNNINNNDFQSKKPKMSGFIFSTPTPPFNEQEPVSSVSNTSPEEDVAMCLMMLSRDKWSRERNNINNVFEEQEQEQEESKVKRVRGKHLCENCGKTFRSSRALGSHKSVCCRNQDQVKNTNNGDKIFECPFCSKVFGSGQALGGHKRSHLISSSSNSNANNVNPSVSFKESFIDLNLPAPLEVEDDDDDLSVVSDA | 308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g01248 | 308 | Gene3D | Classic Zinc Finger | 173 | 263 | - | - | |
| Car07g01248 | 308 | Pfam | C2H2-type zinc finger | 200 | 219 | - | - | |
| Car07g01248 | 308 | Pfam | C2H2-type zinc finger | 239 | 262 | - | - | |
| Car07g01248 | 308 | Pfam | C2H2-type zinc finger | 3 | 28 | - | - | |
| Car07g01248 | 308 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 239 | 261 | IPR013087 | - | |
| Car07g01248 | 308 | MobiDBLite | consensus disorder prediction | 92 | 131 | - | - | |
| Car07g01248 | 308 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Car07g01248 | 308 | SMART | c2h2final6 | 200 | 220 | IPR013087 | - | |
| Car07g01248 | 308 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Car07g01248 | 308 | SMART | c2h2final6 | 239 | 261 | IPR013087 | - | |
| Car07g01248 | 308 | Coils | Coil | 167 | 187 | - | - | |
| Car07g01248 | 308 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 241 | 261 | IPR013087 | - | |
| Car07g01248 | 308 | MobiDBLite | consensus disorder prediction | 115 | 131 | - | - | |
| Car07g01248 | 308 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 308 | - | - | |
| Car07g01248 | 308 | SUPERFAMILY | beta-beta-alpha zinc fingers | 200 | 261 | IPR036236 | - | |
| Car07g01248 | 308 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 200 | 221 | IPR013087 | - | |
| Car07g01248 | 308 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 308 | IPR044303 | GO:0006355 | |
| Car07g01248 | 308 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 26 | IPR013087 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car07g01248 | 1 | 305 | C2H2 Transcription Factor Family | AT3G60580 | 36.842 | 1.38e-51 | 170 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Car07g01248 | zf-C2H2_6 | 4.1e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g01248 | - | - | gmx:100815124 | 280.796 |