Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01214 atGTCTTCCTCTAACTCTTCCACAACATTATCACTGGACCACCTCCCTCCTTCCGAACAACTTTGTTATGTTCATTGCAATATTTGTGACACCATTCTTGCTGTGAGTGTTCCCTGCACAAGCTTGTTCAAGACCGTTACTGTACGATGTGGTCATTGCACTAACCTCCTTCCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAATTTCATTTGGGACACTCTCTTTTCTCCCCAACTCATAACCTTCTTGAGGAGATGCCAAACCCAACTCCAAATTTTCTGATGAACCACACAAATATTACACCAAATTTCAATGACTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCACGACCACCAATCATAAATAGACCTCCTGAGAAAAGACAGAGAGTTCCCTCAGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGAGGTTCTGATGAAAGATGGGTTTTTTGCTTCAGCTAATGTTGGTGTTTCACCCTACTAA 657 0.4429 MSSSNSSTTLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSLFSPTHNLLEEMPNPTPNFLMNHTNITPNFNDFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDEVLMKDGFFASANVGVSPY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01214 218 PANTHER PROTEIN YABBY 4 1 216 - -
Car07g01214 218 Gene3D High mobility group box domain 127 190 IPR036910 -
Car07g01214 218 SUPERFAMILY HMG-box 126 175 IPR036910 -
Car07g01214 218 PANTHER PROTEIN YABBY 6-RELATED 1 216 IPR006780 GO:0007275
Car07g01214 218 Pfam YABBY protein 17 182 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01214 Car-Chr7 10946818 10949767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01214 28 216 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 8.91e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Car07g01214 YABBY 2.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01214 K25796 - gmx:100798441 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01214 07 10946818 10949767 Car07g01214 07 10946818 10949767 ECH