Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01181 ATGTTCACGGCTAGCAAAGTAGCTTTCACATTAACACCCCCTCGTCCCTGCACTGCACCCACCCCAACACCCTTCATTCCCAACTCTTCTTCTCTTTCTCGTCCTCACTTCATTTCCCGCCACTTATGTCTTCGCCGCCGGCTTTTCCTACTTTCCCCTAAGGCCACCGCCGATCAACAAGGGAAGGTTGAAGATTTTGATGGAGATGCTGTTGTTGATAGTAATGTTCTCCCTTATTGTAGCATAGATAAAAAAGAGAAGAAATCAGTTGGTGAACTTGAGCAAGATTTTCTTCAAGCACTCCAATCATTCTATTATGAGGGAAAGGCTATCATGTCAAATGAAGAATTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCGGATGAACAAAAGTTTCTTGAAGCTTCTATAGCTTATGTATCTGGAAACCCAATTCTGAATGACAAACAGTATGATGAGTTGAAACTGAGGCTAAAGAGGGAAGGGAGTGAAATAGTTGTTGAGGGTCCAAGGTGCAGTCTTCGAAGTAAAAAGGTTATTTGTTTATATGTTTACAGTGACCTTTCTGTTGACTATCTAAAGATGTCCGGGCTGAACGCCCCAGCCACTGTGATTGCATTAGGATTGTTCTTCTTCCTCGATGATCTGACTGGATTTGAGATCACTTACTTGCTAGAGCTGCCGGAGCCTTTTAGTTTCATTTTCACCTGGTTTGCTGCTGTTCCCCTCATTGTATATCTAGCTCAATCACTAACAAATGCCATTATAAAAGATTTTGTGATTTTGAAGGGTCCCTGTCCGAACTGTGGAACTGAGAATACCTCCTTCTTTGGAACTATACTGTCAATTTCAAGTGGTGGTTCCAACAACAAAATTGATTACATTGCCAGAAGGAAGCAATGCCTAAGTGGAGGTATTCCTGGAACCATATTCATTGTTCCAGCAATGGAAGAAGCTCACTTGTTGGttacaattacaattcaattgataatcacaatCATCGTTAAGCCAACATTAGTAGCGGGTAGATTTCAACCCAGTCAATGGACTCTTGCTCATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGTGGAGCGTGTGGGTACGGAAATTTGTTCGTGAACGGTTATGGGACAGATACAGCAGCATTGAGTTCAACATTGTTCAATAATGGGTATGCGTGTGGGACTTGTTATCAAATAAAATGCGTGCAATCTAGTGCATGTAACAATGTTCCTTACACTACTGTCACTGCCACCAATCTTTGCCCTCCTAATTGGTCTGAGGCTTCTGATAATGGTGGATGGTGCAACCCACCACGTTCACATTTTGATATGTCTAAGCCCGCTTTCATGAAAATTGCACAGTGGAAGGCTGGTATCGTCCCTATTATGTACCGCAGAGTACCTTGCGCAAGGAGTGCAGGGCTTAGATTCTCTTTCCAAGGAAATAGATATTGGCTATTGGTATACGTGATGAATGTGGGGGGTGGAGGAGATATTGCTAATATGTGGGTGAAAGGAAGCAGAACAGGGTGGATTAGCATGAGTCACAATTGGGGGGCTTCTTACCAAGCATTTGCAACACTTAGGGGCCAAACTCTTTCTTTCAAGATTACTTCCTACACCACCAAAGAAACTATAGTAGCATGGAATGTTGCTCCTTCCAATTGGGGTGCTGGATTAACCTATTCAACCCATGCCAATTTCCTTTAA 1752 0.4247 MFTASKVAFTLTPPRPCTAPTPTPFIPNSSSLSRPHFISRHLCLRRRLFLLSPKATADQQGKVEDFDGDAVVDSNVLPYCSIDKKEKKSVGELEQDFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASIAYVSGNPILNDKQYDELKLRLKREGSEIVVEGPRCSLRSKKVICLYVYSDLSVDYLKMSGLNAPATVIALGLFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVYLAQSLTNAIIKDFVILKGPCPNCGTENTSFFGTILSISSGGSNNKIDYIARRKQCLSGGIPGTIFIVPAMEEAHLLVTITIQLIITIIVKPTLVAGRFQPSQWTLAHATFYGDETASATMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNNVPYTTVTATNLCPPNWSEASDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPIMYRRVPCARSAGLRFSFQGNRYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLRGQTLSFKITSYTTKETIVAWNVAPSNWGAGLTYSTHANFL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01181 583 Pfam Expansin C-terminal domain 490 567 IPR007117 -
Car07g01181 583 Gene3D - 343 484 IPR036908 -
Car07g01181 583 PRINTS Expansin/Lol pI family signature 397 415 IPR007118 GO:0005576
Car07g01181 583 PRINTS Expansin/Lol pI family signature 564 578 IPR007118 GO:0005576
Car07g01181 583 PRINTS Expansin/Lol pI family signature 525 539 IPR007118 GO:0005576
Car07g01181 583 PRINTS Expansin/Lol pI family signature 357 372 IPR007118 GO:0005576
Car07g01181 583 PRINTS Expansin/Lol pI family signature 375 393 IPR007118 GO:0005576
Car07g01181 583 PRINTS Expansin/Lol pI family signature 471 487 IPR007118 GO:0005576
Car07g01181 583 SMART dpbb_1 393 478 IPR007112 -
Car07g01181 583 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 498 578 IPR007117 -
Car07g01181 583 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 376 488 IPR007112 -
Car07g01181 583 PRINTS Expansin signature 388 402 IPR002963 GO:0009664
Car07g01181 583 PRINTS Expansin signature 487 499 IPR002963 GO:0009664
Car07g01181 583 PRINTS Expansin signature 446 463 IPR002963 GO:0009664
Car07g01181 583 PRINTS Expansin signature 427 437 IPR002963 GO:0009664
Car07g01181 583 PRINTS Expansin signature 499 520 IPR002963 GO:0009664
Car07g01181 583 PRINTS Expansin signature 463 476 IPR002963 GO:0009664
Car07g01181 583 PRINTS Expansin signature 534 555 IPR002963 GO:0009664
Car07g01181 583 Gene3D - 488 583 IPR036749 -
Car07g01181 583 PANTHER EXPANSIN-A15 330 582 IPR002963 GO:0009664
Car07g01181 583 SUPERFAMILY Barwin-like endoglucanases 357 506 IPR036908 -
Car07g01181 583 Pfam Lytic transglycolase 393 478 IPR009009 -
Car07g01181 583 PANTHER EXPANSIN 330 582 - -
Car07g01181 583 SUPERFAMILY PHL pollen allergen 486 577 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01181 Car-Chr7 10595872 10602953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01181 338 582 Expansin Gene Family AT1G12560 66.939 4.89e-124 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01181 - - gmx:100781459 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01181 07 10595872 10602953 Car07g01181 07 10595872 10602953 ECH
Car07g01181 07 10595872 10602953 Car08g00253 08 2054440 2056414 PCT