Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01179 atggttagaggaaaaactcaaatgaaacgcatagaaaatgagtcaaatagacaagtaactttctctaagagaagaaatgggttgcttaaaaaggcttttgaactttctgtgctttgtgatgctgaagtagcactcatcatcttctctactagagggaaactctatgagttctctaCTTCAAGTATAAACAAAACGGTTGAACGCTATCAAAGGAAAATCAAGGACTTCACTCTCAACACCAAAGGAATCCAAGAAAATACACAGCATCTAAAGGAATGTGATAACAGCGCAACGAAGAAGATCGAGCACCTAGAACTTTCCAAAAGGAAGCTGTTAGGAAATGAATTGGATACATGTGCTATTGACGAATTACAACAGATTGAAGAACAAATCGAACGTAGCCTAAGCAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGAGCAAATTGAAAAGCTCAGAGAACAGGAAAGGTACCTACTTGAAGAAAATAGACACTTACGCGATAAGTGTCGGATTGAACAAGATAATGAACTCATAACAGAAAGTTTGCAGGGCGGGGAGGTTGAGACAGAGTTGTTCATAGGGAGACCTGAGAGAAGAATGGTTTGA 612 0.2827 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSTSSINKTVERYQRKIKDFTLNTKGIQENTQHLKECDNSATKKIEHLELSKRKLLGNELDTCAIDELQQIEEQIERSLSKIRARKNQLFREQIEKLREQERYLLEENRHLRDKCRIEQDNELITESLQGGEVETELFIGRPERRMV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01179 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 PANTHER MADS-BOX PROTEIN SOC1 1 199 - -
Car07g01179 203 Coils Coil 121 170 - -
Car07g01179 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Car07g01179 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g01179 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g01179 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car07g01179 203 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Car07g01179 203 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Car07g01179 203 PANTHER MADS BOX PROTEIN 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01179 Car-Chr7 10568079 10576899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01179 1 201 MADS-box Gene Family AT4G22950 58.962 7.11e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car07g01179 K-box 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01179 - - mtr:MTR_4g102530 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01179 07 10568079 10576899 Car07g01179 07 10568079 10576899 ECH
Car07g01179 07 10568079 10576899 Car07g02659 07 51096908 51103782 ECH
Car07g01179 07 10568079 10576899 Car03g01481 03 60324628 60331143 ECH