Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01173 ATGAAATCAATTGACGAGTCTAGTTACCAATCGATATCATCAGAAACGATGTATGAAGAAATCATGTTAGCATCAGAGCAACCAAAGAAGCGTGCGGGGAGAAGAATATTCAAGGAGACGAGACATCCAGTGTACAGAGGAGTAAGAAAGAGGAACAACAACAAGTGGGTTTGCGAGGTTCGTGTTCCGAAAAATAAGTCCTCGAGGATCTGGTTGGGAACATATCCAACGGCTGAGATGGCGGCACGTGCACACGACGTTGCCGCGCTGGCACTTCGCGGAAAGTCGGCTTGCCTCAACTTTGCTGACTCGGCTTGGCGGTTGACTTTGCCGGCTTCGACTAATGCGAAGGAGATTAAGAAAATGGCGGAGGAGGCTGCTTTGGCATTTGCGAGTAATAATAATAGCGTTGGCGTAATGGAAGATGAAGAGGATAATAAAGGTTTGGTGGGATTGGGATTGTGTGTGGAAGTTCCAGGTGAGGAGCATGATTGGTTTCGGATTATGGCGGATGAGCCTTTACGATCTCCAATTACTCCATTTATAAGATATGGTAATAGGGAATGGAGTAATATGGATGTTGATGTTGATGTTGAGGTTTCCTTGTGGAGCTTTACTATCTAG 624 0.4567 MKSIDESSYQSISSETMYEEIMLASEQPKKRAGRRIFKETRHPVYRGVRKRNNNKWVCEVRVPKNKSSRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRLTLPASTNAKEIKKMAEEAALAFASNNNSVGVMEDEEDNKGLVGLGLCVEVPGEEHDWFRIMADEPLRSPITPFIRYGNREWSNMDVDVDVEVSLWSFTI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01173 207 SUPERFAMILY DNA-binding domain 44 104 IPR016177 GO:0003677
Car07g01173 207 ProSiteProfiles AP2/ERF domain profile. 44 102 IPR001471 GO:0003700|GO:0006355
Car07g01173 207 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Car07g01173 207 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Car07g01173 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 135 IPR045277 GO:0003700
Car07g01173 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 134 207 IPR045277 GO:0003700
Car07g01173 207 SMART rav1_2 44 108 IPR001471 GO:0003700|GO:0006355
Car07g01173 207 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Car07g01173 207 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
Car07g01173 207 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
Car07g01173 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 134 207 - -
Car07g01173 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 18 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01173 Car-Chr7 10523683 10524535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01173 19 205 AP2-EREBP Transcription Factor Family AT1G63030 49.495 3.84e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g01173 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01173 - K09286 pvu:PHAVU_003G212800g 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01173 07 10523683 10524535 Car07g01173 07 10523683 10524535 ECH
Car07g01173 07 10523683 10524535 Car08g00242 08 1954578 1955345 PCT