Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01172 ATGTCTTCATCTTCTTCTTCCAAAAGACACCCAACATACCACGGCATTAGAAGCCGTGGAGGAAAATGGGTGACCGAAATCCGTGAGCCACGTAAGACTAATCGTATATGGTTAGGCACATTTTCCACCCCTGAGATGGCTGCTGCAGCGTATGACGTTGCAACTTTAGCTCTCAAGGGCGGGGAAGCAATTTTAAATTTCCCCGACTTGGCTCGCAGGTATCCGGTGCCGGCATCGAATTCCGCGGAAGATATTCGGAGTGCCGCCACCTCTGCAGCCGAACTAATGACGGGTGGATCCACATTTAATGAGCCTTATAACAATGCTTTCTACGATGCTCCTCATTCGTATAATTATGAAAGTGAGTTTATTGATGAAGAAGCTATATTCTCCATGCCAAGATTGTTGGTAGACATGGCTGAGGGAATGCTGCTTTCTCCGCCTAGAATGAATTTACCACCGTCTGACTACTCGACTGAATATCAAACATTTGGGGAAAGTTTGTGGAACTTTTGA 516 0.4612 MSSSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFSTPEMAAAAYDVATLALKGGEAILNFPDLARRYPVPASNSAEDIRSAATSAAELMTGGSTFNEPYNNAFYDAPHSYNYESEFIDEEAIFSMPRLLVDMAEGMLLSPPRMNLPPSDYSTEYQTFGESLWNF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01172 171 PANTHER ETHYLENE RESPONSE FACTOR 2 171 - -
Car07g01172 171 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Car07g01172 171 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Car07g01172 171 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Car07g01172 171 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Car07g01172 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 171 - -
Car07g01172 171 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Car07g01172 171 Pfam AP2 domain 14 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01172 Car-Chr7 10519470 10520672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01172 7 171 AP2-EREBP Transcription Factor Family AT5G52020 53.448 4.49e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g01172 AP2 1.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01172 - - gmx:100778793 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01172 07 10519470 10520672 Car07g01172 07 10519470 10520672 ECH