Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01162 ATGTCAACGACAAGGTCGCAAAACCGTTCGCCGGATGAAACCACGGATCCGACGCCTTTAATCGGAAGTTCGTCCGACGAATCAAACTCCGGGCGGAGAGTTATCCGCGCGCCGAGTCTCCGGCAAGCGGCGCGGTTCTTGAGACAAGCGAGTGGGAGGAGGCTGATGCGTGAACCGTCGATGATGGTGAGAGAGACAGCGGCGGAACAATTGGAAGAGAGACAAAGCGATTGGGCTTATTCGAAGCCCGTTGTGATCCTTGATATTCTCTGGAATTTCGCGTTCGTTGTTGCTGCCGTTACTGTGTTGATTTTGAGTCCGAATGAATCTCCAAGTACGCCTCTTAGGTTGTGGATTTTAGGGTATGCTTTACAGTGTGTTGTTCATGTTTTGTGTGTTTGTTTTGAGTTTCGGAGACGGAGGCGGGTGCGGGAACAGTCGAACGCGACTGCCGCCAACGCCGTTGAGGGACGTGGCAGTGGGGATTTGAGCTTTGGTTCAATGGATGGTTATGTGAATTTGTCGCAGTATGGGGAAGATGGTTCTACAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCTGATGGTCAAGCTTTAATCCAGGATTCTCCTAAGCTTTACTGGTTATGTATTGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCTCTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGTATCATTGCACTTCTGTATGCAGTTGCAGATCAGGAAGGAGCAACAAAAGAAGACATTGAGCAGTTGTCGAAATTCACATTCCAAAGAAAAAGTAAGGAAAAGCTTGCTGGTAATACACAAGGACCTATTGGAGGAATAATGACTGAATGCCAAGCTGATTCCCCAATTGAACATGTGCTTGCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCCTATGATGACGGGGTTGAACTAAGACAACTTCCTTGCGGTCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGCACATTAATGCCACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGCACTATCCATGGTCAAGAGGAAGTATAG 1140 0.4693 MSTTRSQNRSPDETTDPTPLIGSSSDESNSGRRVIRAPSLRQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNFAFVVAAVTVLILSPNESPSTPLRLWILGYALQCVVHVLCVCFEFRRRRRVREQSNATAANAVEGRGSGDLSFGSMDGYVNLSQYGEDGSTSMAKHLESANTMFSFIWWVIGFYWVSADGQALIQDSPKLYWLCIVFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDIEQLSKFTFQRKSKEKLAGNTQGPIGGIMTECQADSPIEHVLADEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLHINATCPLCKYNILKSTIHGQEEV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01162 379 CDD RING-H2_RNF111_like 323 367 - -
Car07g01162 379 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 379 - -
Car07g01162 379 PANTHER TARGET OF ERK KINASE MPK-1 3 379 - -
Car07g01162 379 MobiDBLite consensus disorder prediction 1 32 - -
Car07g01162 379 Pfam Ring finger domain 323 365 IPR001841 -
Car07g01162 379 SMART ring_2 324 364 IPR001841 -
Car07g01162 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 377 IPR013083 -
Car07g01162 379 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Car07g01162 379 MobiDBLite consensus disorder prediction 1 34 - -
Car07g01162 379 SUPERFAMILY RING/U-box 314 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01162 Car-Chr7 10436349 10444647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01162 18 372 C3H Transcription Factor Family AT1G68070 48.895 1.81e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01162 - - gmx:100779757 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01162 07 10436349 10444647 Car07g01162 07 10436349 10444647 ECH
Car07g01162 07 10436349 10444647 Car08g00235 08 1871846 1877356 PCT