Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01141 ATGCAGCCGCGGAACAGGAGAGAAATGGTGGTGGAAGAAGGAGAAGCATTGGTGGCGTGCAGTGACAAAAGCATGAAAATTGGGGTGACGATATGGGACATGGACACAGGGGAAAAGATGCTTCACATACCAACATGTGCTTCACCACCTTTTGGATTATTGTGTTTAAGAAATCGCTTCCTCGTCGCATCGCAATTGAACAAACATGGCTCTGTTGGTGGTGGAGCCATTGTTGTTTGGGCCTTGAACAAGCCTCAGCAACCACTTTTGAATTATACAGTGGAGGCCATTGGGCCACTTTCTAGCACACAAGATGGCATATACCTTGTGGGAGGTGCTTTTTCTGGAAGTGCTTATATCTGGAATGTGACTAGTGGAAAATTGTTGAAGACTTGGACTGCTCATTATAAGTCACTAAAACACATTATATTTTCAAATGATGATTCTCTTCTTATTTCTGGTTCAGTTGATGGTATGATATGTGTTTGGTCCATGATTAGTTTGTTAGATGTGGAAGAAATAGGCAGCTGGGATCCTTTATTACATTGTTTGCCAGGGCACATGTCCTCCATAACAGGTCTTTTAGCTACATCTTGCAGTTGCTTTTCAATTTTAATATCAAGCTCCCTTGATGGAACATGCAAGGTTTGGGACTTTATCACTGGAAAGCTTATGCAAACTCAAGGTTATCCGTTGGCAATAACTTGCATCACACTTCACCAAAGAGAAAGTCTCTTGTTTTGTGGTACTGAAAATGGAACAATGATTGTCAACAAGGTTGATATTGGTTTGGAAGAAGGTCCTTATTCCATTATCAGAGGAGACCAATCACTTGAATTGAAAGGTCACAGTGGAGCCATAACTGCATTGACCTCTAGTAGGGCAGGCCTAATATCTTCCTCTGAAGACTGCACAATCTGCATATGGGATGTCATGAGCTGGACAATCACTAAAAGATTCAATCTTCAAAAAGGAAAAGTAACTAATCTCGTGGTAATAAATCGGTCTTTGGTGCTCTCCACATCGAATCACACAAGAGCCACCAATCAATATACTGTTTCTCCATTGGATAAGTGTCCTCTGCAGATGAACTCGTACAAGAGAACTACCACTCTTGTTTCCTTGAGTCGCCTCTACAAAGAAAAACAAACTTACATTGATTTACGAAGTTCTAATTTATTGAGACAAAGCATCTCTGATTCACAGAAATCATACATGCATGTGGCCATGACCATACAAATGAAAATGGAAACAAATATAGAGAATCATTTATGGGCAACAAAGATGGCAAAACATGTAACGATGATAAACAGACAGTTGCAGTCACGGCTGTTGGGCTTGATACATCGCAGATTGTTTGGTTCAAACAGAATCAGCTTTCAAAAAACAGGTAGAAAAAGGCCCAAAATTAAGAGTATTTTACCAGAAGAGGAGAATTAA 1440 0.4028 MQPRNRREMVVEEGEALVACSDKSMKIGVTIWDMDTGEKMLHIPTCASPPFGLLCLRNRFLVASQLNKHGSVGGGAIVVWALNKPQQPLLNYTVEAIGPLSSTQDGIYLVGGAFSGSAYIWNVTSGKLLKTWTAHYKSLKHIIFSNDDSLLISGSVDGMICVWSMISLLDVEEIGSWDPLLHCLPGHMSSITGLLATSCSCFSILISSSLDGTCKVWDFITGKLMQTQGYPLAITCITLHQRESLLFCGTENGTMIVNKVDIGLEEGPYSIIRGDQSLELKGHSGAITALTSSRAGLISSSEDCTICIWDVMSWTITKRFNLQKGKVTNLVVINRSLVLSTSNHTRATNQYTVSPLDKCPLQMNSYKRTTTLVSLSRLYKEKQTYIDLRSSNLLRQSISDSQKSYMHVAMTIQMKMETNIENHLWATKMAKHVTMINRQLQSRLLGLIHRRLFGSNRISFQKTGRKRPKIKSILPEEEN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01141 479 Gene3D - 229 348 IPR015943 GO:0005515
Car07g01141 479 SMART WD40_4 221 259 IPR001680 GO:0005515
Car07g01141 479 SMART WD40_4 273 310 IPR001680 GO:0005515
Car07g01141 479 SMART WD40_4 125 164 IPR001680 GO:0005515
Car07g01141 479 SMART WD40_4 176 218 IPR001680 GO:0005515
Car07g01141 479 SMART WD40_4 85 122 IPR001680 GO:0005515
Car07g01141 479 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 14 472 - -
Car07g01141 479 SUPERFAMILY WD40 repeat-like 27 343 IPR036322 GO:0005515
Car07g01141 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 165 - -
Car07g01141 479 ProSitePatterns Trp-Asp (WD) repeats signature. 297 311 IPR019775 -
Car07g01141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 227 IPR001680 GO:0005515
Car07g01141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 319 IPR001680 GO:0005515
Car07g01141 479 Gene3D - 7 228 IPR015943 GO:0005515
Car07g01141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 165 IPR001680 GO:0005515
Car07g01141 479 PANTHER WD-REPEAT PROTEIN 18 14 472 IPR045227 -
Car07g01141 479 Pfam WD domain, G-beta repeat 126 164 IPR001680 GO:0005515
Car07g01141 479 Pfam WD domain, G-beta repeat 277 310 IPR001680 GO:0005515
Car07g01141 479 Pfam WD domain, G-beta repeat 180 218 IPR001680 GO:0005515
Car07g01141 479 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Car07g01141 479 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Car07g01141 479 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01141 Car-Chr7 10188320 10192817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01141 112 320 U-box Gene Family AT2G33340 21.198 5.80e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01141 K14829 - gmx:102662801 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01141 07 10188320 10192817 Car07g01141 07 10188320 10192817 ECH