Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car07g01123 | ATGGAACATTCTGAATCCGATTCCGTTGCAGTTTCATACTCCAAAGACCCCCAATCGGGTTCTGAGGTACAACAACCTTCTTCCCCCGTTGATCATCCTCCACCGTCAGATCTCAATCATGCGGCTGAGGATGAAGACGCACTCACTGAGGAGCTTCAGAACAAGTTGGATTtgaagagtaaaggtgaagatgaaggggttgatgaaactgaagataaagTTTCTAACTTTGATGATGGTGAACAAGTTTGCGATGAAGAATCTGTTAAGGGTGAAGAAGTGGTtgatggagatagcaaggggtgggataccaatagttggaatgataatgtcaatgaagaggttgatggtggtagagatggttatgggtatggtagtggttatggtggtggttatggtgatggttatggttatggtgatggttatggctatggtgatggagtTGAAAAGAAGGAAGAGAAAAGAAATGATGGAACTCACCAATTTCCTTTGAGACCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGTCTTGCAAGTTTGGATTCAACTGCAAATTTAATCACCCTATTAGGAGGAAAAACCAGGCTGTTAAGGAGAAGGTGCGAGAAAGAGAAGAACCAGCAGAAAAGTCAGGCCAGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTCGCAGCACCGATTTCTGAACTTAACTTTCTTGGCTTACCTATACGTCTGGGAGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCGAACTGTAGGTTCAATCATCCTGATCCTACAACTGTAGTAGGAGGTGATACAAAATCAGGATATGGTAATGGAGGATCCATTTCATTACAAGGTGTATCACAACAATCTGTTGCCCCATGGTCTTCTTCAAGAAAGTTAAATGAAACACCTTTTGTGCCAATGATGATTACGCCTACTCAAGGACTTGCTCCACAAAGTTCTGATTGGAATGGATATAAGGCACCTGTCTACTTATCTGAGAGGATTGTGCATCCATCTTCTACATATGTCATGAACAAGCCAACAATTGAAACAAATGTCTACATGCACCATCACAAGCAGATATCAGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTTCTTCTTAAAGACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTGCAAGATTGCCTCCATGCAATCTTAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTATCTGCTCGCACTATAGTCGTTACGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGACCACCCAGAAAACTCACTTCCCTTGATTCCTGGACTCGGCCAACAATCCTACACAAACTCAGCTAGTGTTCAGGTGACTGGGATGGGTGGAAGTACCGGTGCAAATGATGTGACAATTCAGCAGTCTGTGTAA | 1515 | 0.3716 | MEHSESDSVAVSYSKDPQSGSEVQQPSSPVDHPPPSDLNHAAEDEDALTEELQNKLDLKSKGEDEGVDETEDKVSNFDDGEQVCDEESVKGEEVVDGDSKGWDTNSWNDNVNEEVDGGRDGYGYGSGYGGGYGDGYGYGDGYGYGDGVEKKEEKRNDGTHQFPLRPEAEDCSFYMKTGSCKFGFNCKFNHPIRRKNQAVKEKVREREEPAEKSGQTECKYYQRSGGCKFGKACKFNHTRGFAAPISELNFLGLPIRLGEKECPYYMRTGSCKFGSNCRFNHPDPTTVVGGDTKSGYGNGGSISLQGVSQQSVAPWSSSRKLNETPFVPMMITPTQGLAPQSSDWNGYKAPVYLSERIVHPSSTYVMNKPTIETNVYMHHHKQISVEEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVARLPPCNLSDKGLPLRPDQSICSHYSRYGICKFGPACRFDHPENSLPLIPGLGQQSYTNSASVQVTGMGGSTGANDVTIQQSV | 504 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car07g01123 | 504 | ProSiteProfiles | Zinc finger C3H1-type profile. | 391 | 419 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 393 | 418 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 169 | 191 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 215 | 237 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 259 | 282 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 439 | 464 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Car07g01123 | 504 | SUPERFAMILY | CCCH zinc finger | 438 | 467 | IPR036855 | GO:0046872 | |
Car07g01123 | 504 | Gene3D | - | 146 | 203 | - | - | |
Car07g01123 | 504 | SUPERFAMILY | CCCH zinc finger | 396 | 420 | IPR036855 | GO:0046872 | |
Car07g01123 | 504 | ProSiteProfiles | Zinc finger C3H1-type profile. | 256 | 284 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | ProSiteProfiles | Zinc finger C3H1-type profile. | 212 | 240 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | SUPERFAMILY | CCCH zinc finger | 257 | 284 | IPR036855 | GO:0046872 | |
Car07g01123 | 504 | Gene3D | - | 390 | 471 | - | - | |
Car07g01123 | 504 | Gene3D | - | 206 | 291 | - | - | |
Car07g01123 | 504 | SUPERFAMILY | CCCH zinc finger | 216 | 239 | IPR036855 | GO:0046872 | |
Car07g01123 | 504 | SMART | c3hfinal6 | 437 | 464 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | SMART | c3hfinal6 | 391 | 418 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | SMART | c3hfinal6 | 165 | 192 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | SMART | c3hfinal6 | 212 | 239 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | SMART | c3hfinal6 | 256 | 283 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | MobiDBLite | consensus disorder prediction | 37 | 68 | - | - | |
Car07g01123 | 504 | SUPERFAMILY | CCCH zinc finger | 166 | 193 | IPR036855 | GO:0046872 | |
Car07g01123 | 504 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
Car07g01123 | 504 | ProSiteProfiles | Zinc finger C3H1-type profile. | 437 | 465 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | PANTHER | PROTEIN PHOSPHATASE RELATED | 8 | 504 | - | - | |
Car07g01123 | 504 | MobiDBLite | consensus disorder prediction | 76 | 99 | - | - | |
Car07g01123 | 504 | ProSiteProfiles | Zinc finger C3H1-type profile. | 165 | 193 | IPR000571 | GO:0046872 | |
Car07g01123 | 504 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 8 | 504 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car07g01123 | Car-Chr7 | 10037170 | 10040914 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car07g01123 | 387 | 478 | C2H2 Transcription Factor Family | AT3G02830 | 46.809 | 8.47e-22 | 95.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Car07g01123 | zf-CCCH | 1.1e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car07g01123 | - | - | mtr:MTR_4g104260 | 751.895 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car07g01123 | 07 | 10037170 | 10040914 | Car05g01657 | 05 | 61385279 | 61389210 | PCT |