Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01123 ATGGAACATTCTGAATCCGATTCCGTTGCAGTTTCATACTCCAAAGACCCCCAATCGGGTTCTGAGGTACAACAACCTTCTTCCCCCGTTGATCATCCTCCACCGTCAGATCTCAATCATGCGGCTGAGGATGAAGACGCACTCACTGAGGAGCTTCAGAACAAGTTGGATTtgaagagtaaaggtgaagatgaaggggttgatgaaactgaagataaagTTTCTAACTTTGATGATGGTGAACAAGTTTGCGATGAAGAATCTGTTAAGGGTGAAGAAGTGGTtgatggagatagcaaggggtgggataccaatagttggaatgataatgtcaatgaagaggttgatggtggtagagatggttatgggtatggtagtggttatggtggtggttatggtgatggttatggttatggtgatggttatggctatggtgatggagtTGAAAAGAAGGAAGAGAAAAGAAATGATGGAACTCACCAATTTCCTTTGAGACCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGTCTTGCAAGTTTGGATTCAACTGCAAATTTAATCACCCTATTAGGAGGAAAAACCAGGCTGTTAAGGAGAAGGTGCGAGAAAGAGAAGAACCAGCAGAAAAGTCAGGCCAGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTCGCAGCACCGATTTCTGAACTTAACTTTCTTGGCTTACCTATACGTCTGGGAGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCGAACTGTAGGTTCAATCATCCTGATCCTACAACTGTAGTAGGAGGTGATACAAAATCAGGATATGGTAATGGAGGATCCATTTCATTACAAGGTGTATCACAACAATCTGTTGCCCCATGGTCTTCTTCAAGAAAGTTAAATGAAACACCTTTTGTGCCAATGATGATTACGCCTACTCAAGGACTTGCTCCACAAAGTTCTGATTGGAATGGATATAAGGCACCTGTCTACTTATCTGAGAGGATTGTGCATCCATCTTCTACATATGTCATGAACAAGCCAACAATTGAAACAAATGTCTACATGCACCATCACAAGCAGATATCAGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTTCTTCTTAAAGACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTGCAAGATTGCCTCCATGCAATCTTAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTATCTGCTCGCACTATAGTCGTTACGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGACCACCCAGAAAACTCACTTCCCTTGATTCCTGGACTCGGCCAACAATCCTACACAAACTCAGCTAGTGTTCAGGTGACTGGGATGGGTGGAAGTACCGGTGCAAATGATGTGACAATTCAGCAGTCTGTGTAA 1515 0.3716 MEHSESDSVAVSYSKDPQSGSEVQQPSSPVDHPPPSDLNHAAEDEDALTEELQNKLDLKSKGEDEGVDETEDKVSNFDDGEQVCDEESVKGEEVVDGDSKGWDTNSWNDNVNEEVDGGRDGYGYGSGYGGGYGDGYGYGDGYGYGDGVEKKEEKRNDGTHQFPLRPEAEDCSFYMKTGSCKFGFNCKFNHPIRRKNQAVKEKVREREEPAEKSGQTECKYYQRSGGCKFGKACKFNHTRGFAAPISELNFLGLPIRLGEKECPYYMRTGSCKFGSNCRFNHPDPTTVVGGDTKSGYGNGGSISLQGVSQQSVAPWSSSRKLNETPFVPMMITPTQGLAPQSSDWNGYKAPVYLSERIVHPSSTYVMNKPTIETNVYMHHHKQISVEEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVARLPPCNLSDKGLPLRPDQSICSHYSRYGICKFGPACRFDHPENSLPLIPGLGQQSYTNSASVQVTGMGGSTGANDVTIQQSV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01123 504 ProSiteProfiles Zinc finger C3H1-type profile. 391 419 IPR000571 GO:0046872
Car07g01123 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 393 418 IPR000571 GO:0046872
Car07g01123 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 191 IPR000571 GO:0046872
Car07g01123 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 237 IPR000571 GO:0046872
Car07g01123 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 282 IPR000571 GO:0046872
Car07g01123 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 439 464 IPR000571 GO:0046872
Car07g01123 504 MobiDBLite consensus disorder prediction 7 27 - -
Car07g01123 504 SUPERFAMILY CCCH zinc finger 438 467 IPR036855 GO:0046872
Car07g01123 504 Gene3D - 146 203 - -
Car07g01123 504 SUPERFAMILY CCCH zinc finger 396 420 IPR036855 GO:0046872
Car07g01123 504 ProSiteProfiles Zinc finger C3H1-type profile. 256 284 IPR000571 GO:0046872
Car07g01123 504 ProSiteProfiles Zinc finger C3H1-type profile. 212 240 IPR000571 GO:0046872
Car07g01123 504 SUPERFAMILY CCCH zinc finger 257 284 IPR036855 GO:0046872
Car07g01123 504 Gene3D - 390 471 - -
Car07g01123 504 Gene3D - 206 291 - -
Car07g01123 504 SUPERFAMILY CCCH zinc finger 216 239 IPR036855 GO:0046872
Car07g01123 504 SMART c3hfinal6 437 464 IPR000571 GO:0046872
Car07g01123 504 SMART c3hfinal6 391 418 IPR000571 GO:0046872
Car07g01123 504 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Car07g01123 504 SMART c3hfinal6 212 239 IPR000571 GO:0046872
Car07g01123 504 SMART c3hfinal6 256 283 IPR000571 GO:0046872
Car07g01123 504 MobiDBLite consensus disorder prediction 37 68 - -
Car07g01123 504 SUPERFAMILY CCCH zinc finger 166 193 IPR036855 GO:0046872
Car07g01123 504 MobiDBLite consensus disorder prediction 1 118 - -
Car07g01123 504 ProSiteProfiles Zinc finger C3H1-type profile. 437 465 IPR000571 GO:0046872
Car07g01123 504 PANTHER PROTEIN PHOSPHATASE RELATED 8 504 - -
Car07g01123 504 MobiDBLite consensus disorder prediction 76 99 - -
Car07g01123 504 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Car07g01123 504 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01123 Car-Chr7 10037170 10040914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01123 387 478 C2H2 Transcription Factor Family AT3G02830 46.809 8.47e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g01123 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01123 - - mtr:MTR_4g104260 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01123 07 10037170 10040914 Car05g01657 05 61385279 61389210 PCT