LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01120	ATGCAACCTGCATTACCACAAGAAGAGGCTTTTCAAACTTCGAGTTTTTCGACGACCCATTTTCTACGCTATACTATTTCATTCAACGTCGTTTTGCGAGTTTCTGGTTGGCTTGCACTGTTTATAGCGATGGATGGTAGGAGGCATTCTGTGGACGTTCCTATTTCTAAAACTCTTGTAGCACTAAGGAGAGTAAGGTCATTAAGGGATCCTTCAACAAATGGTATTAGCAAGTTATCTCCTTTGATTGATAATGGATGTTGGGAAAATGGGATTTCTTTGAGGTTTCTTAATGCTCCttatgaatgtgattttgatgataataatggttatTTAAGGTCAAAGGGTTTAGATTTTAAGGAACATAGAGGGCATGCTACTACTAAATTTGAAATGAATTGTCACATGATGAACTATTGTGAGGAACATCAACAAGATGATGGAAATAAATCCCCAAAAGAAAGCTGTTGTAGCAACCATGAAGCTAAAGGATTGGATTTGGTTTCCATTAACCCTTCTAGTAATCATTTGAAGGATGAGGAATCATGCTATTTATCAACTGCATTGTCATCACAATTTAGGAGAATAGATCATTCAAAGTCCAACAGAAAGTTACTGCGGAAAAATCGAGTGAAACCTTCTGAATTGACGGGTGATAATGCAAGCTGTATTAGGAGTCCATGCATTTCGGTTGACAATGCTCTATCACCTCATAGTGTCTCAACACATACACCTCAAGACGTTGATGTTGATGTTTTAGTTGATTACCATGGATGTGGAATAAGCTGTTGTTGGTCGAAGTCGCCGAGGTTTAGAGACTCAAATCATTATTCTGAAATGGAAGGCCTTCCTTTGATGTTGCAGCATGCTAATGAGACAGATTTCCTTGAACATAAAAGCATGATACACATTGGTGGTGAAATTAGTCCAACATTAGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCAAAATCTTTTGATGATTTGATCGGACAAAATGTGGTTGGGAAGTCTCTTTTGAGTGCCATCTGTAGAGGAAGGATACCATCATTTTATCTCTTCTATGGTCCTCGCGGCACGGGCAAGACCTCTGCATCAAGGATATTTGCTGCTGCGCTGAATTGCCTCTCCCTCGAGGAGCAAAAGCCGTGTGGTTTGTGTAGACAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGACTCTCTGAGAATTAATCGCACAGACAAAGTTAAATCCCTTGTTAAGAATGCATTCACAGCTCCGGTTTCCTCGCGTTTTAAGGTGTACATTATTGATGAGTGCCAGTTATTGAATGGTGAAACATGGATGACTCTTTTGAATAGCCTAGATAGTGTTTCTCAGCAAGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCACGAAGTGTGGTTACCCGAGCTCAAAGGTATCACTTTGCAAAGATTAAAGATGCAGACATTGCAAGTAGATTGAAAAGAATATGTGCTGAAGAGGGTCTTGAATCTGAACAAGATGCTTTGGATTTCATTGCTACTAAATCATGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTTAGTTTGATTGGTAAAAAAATCACAATTTCCTTAGCCTATGAGCTTACTGGTGTCATATCGGATGATGAGTTGCTTGATTTGTTGGACCTATCTTTGTCATCGGACACTTCAAATACGGTTATAAGAGCGCGGGAGCTGTTGAGATCAAGGATAGATCCTTTACAACTTATATCTCAGTTGGCGAATCTTATTATGGACATTCTTGCAGGAAAATGTGAACTTGGTGGTTCTGAAATCAGAAGAAGATTTTTTGACAGGCATGTTTCGGAATCAAGCATGCAGAAACTTAGTCATGCATTGAGAATACTTTCTGATACAGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTGAGCTCTATAGAATATTCATCTGTGGATACCAATGATACCAAGTTGTGTATAAGAGCTGCATCCAATAGAGGTGGTGATTTATGCAGTACATCGTCTACAGGTGAAAGCCTGAAGCAACTTGCTACAAGTCAATGTGATGAGAAGTCATATAAAATAGAAGTACAAGAAGATGACAAAGCAACATTAGATTCCATATGGTATAAAGCTGCAGAGATATGTCAATCTAGAAGGCTCAAGGCTTTTCTCATGAAGCAAGGGAAGTTGTCCTCAGTTTGTATTAACCAAGGTCTTGCAGTTGTGGAGCTGGAGTTCAACCATCGCGCCTATGTAACTCGAGCCGAGAAGTCGTGGAAACAAATTGCAAGTTCTCTGCAGTTCATATTAGGTTGTAACATTGAGCTCAGAATCAACCATGTACCTTGTACATCAGATTCCAAGTATGCTAAGTTGAAAAGGTCATCTTTCAATTTCTTCAATTGTTCGCGCAGAATTCTACGAAAATCACTATCATCCGATGAAAAAGAATGTGAATCAGACTATGCTGATTACACCTCTCAAAAGCCTATGATGATGGACAAAACTCTATCCCGCTCCTCCGATTGCGGATACCATGGAATGGAGGTGGTAACAACTCTAAGAAGCTGTGAAGGGAATTTACTAAGCTCAGGGAAAATAATTCTGAACAGGATTGCAGATCAACAAATTCCAAGGATTTCTTTTTCTAGAGTTGAATCTGTCAAAGAAGAGGGGTACAATTGTGAGCATCTTGCTTCATCAACACTTGATTTAGATCATCGTTCCAACTGTTTTCCTCGAACACTTTGGCTTCATAGAAAATTATCTTCTTCATATGCATCAAAACAGAAGGACTTTTGTTTTATCAATCCTCAAGTACAAATGTTCTGA	2895	0.3865	MQPALPQEEAFQTSSFSTTHFLRYTISFNVVLRVSGWLALFIAMDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNGCWENGISLRFLNAPYECDFDDNNGYLRSKGLDFKEHRGHATTKFEMNCHMMNYCEEHQQDDGNKSPKESCCSNHEAKGLDLVSINPSSNHLKDEESCYLSTALSSQFRRIDHSKSNRKLLRKNRVKPSELTGDNASCIRSPCISVDNALSPHSVSTHTPQDVDVDVLVDYHGCGISCCWSKSPRFRDSNHYSEMEGLPLMLQHANETDFLEHKSMIHIGGEISPTLETPRSLSMKFRPKSFDDLIGQNVVGKSLLSAICRGRIPSFYLFYGPRGTGKTSASRIFAAALNCLSLEEQKPCGLCRQCVLFFSGRSKDVKEVDSLRINRTDKVKSLVKNAFTAPVSSRFKVYIIDECQLLNGETWMTLLNSLDSVSQQVVFVMITPDLDKLPRSVVTRAQRYHFAKIKDADIASRLKRICAEEGLESEQDALDFIATKSCGSLRDAEMMLDQLSLIGKKITISLAYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELGGSEIRRRFFDRHVSESSMQKLSHALRILSDTEKQLRISKNQTTWFTAALLQLSSIEYSSVDTNDTKLCIRAASNRGGDLCSTSSTGESLKQLATSQCDEKSYKIEVQEDDKATLDSIWYKAAEICQSRRLKAFLMKQGKLSSVCINQGLAVVELEFNHRAYVTRAEKSWKQIASSLQFILGCNIELRINHVPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSDEKECESDYADYTSQKPMMMDKTLSRSSDCGYHGMEVVTTLRSCEGNLLSSGKIILNRIADQQIPRISFSRVESVKEEGYNCEHLASSTLDLDHRSNCFPRTLWLHRKLSSSYASKQKDFCFINPQVQMF	964

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01120	964	Gene3D	-	311	488	IPR027417	-
	Car07g01120	964	CDD	AAA	331	481	-	-
	Car07g01120	964	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	319	539	IPR027417	-
	Car07g01120	964	PANTHER	DNA POLYMERASE III SUBUNIT GAMMA/TAU	140	931	-	-
	Car07g01120	964	TIGRFAM	dnaX_nterm: DNA polymerase III, subunit gamma and tau	317	663	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Car07g01120	964	Gene3D	-	491	553	-	-
	Car07g01120	964	SMART	AAA_5	349	492	IPR003593	-
	Car07g01120	964	SUPERFAMILY	post-AAA+ oligomerization domain-like	560	661	IPR008921	GO:0003677\|GO:0006260
	Car07g01120	964	Pfam	DNA polymerase III, delta subunit	333	490	-	-
	Car07g01120	964	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	140	931	-	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01120	Car-Chr7	10006005	10011137	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g01120	308	602	Core DNA Replication Machinery Family	AT1G21690	23.232	2.33e-14	73.6

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01120	-		-	pvu:PHAVU_003G207500g	1238.4

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g01120	07	10006005	10011137	Car05g01663	05	61472235	61476763	PCT

Showing 1 to 1 of 1 entries