Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01119 ATGACAACAACAACAACCACTTCACTCTCTTTCCTTTTCTTCCTCTTCTCTCTCATCACCCCATTTTCCCTCATTTCCTCTTCACCCCTTCCCAACCCTCATTTGGTTTCTCAACAAGTCACCAGGAAAATCAATGAGTCTATAGCTAGGAGAAATTTGGGGTACCTATCATGTGGGAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACCCAAACTGGGAAAAAAACAGACAAAGACTAGCAGATTGTGCAATTGGTTTCGGTAAAAACGCAATTGGTGGTAAAAACGGTAAAATTTACGTGGTAACAGATTCAAAAGATGATGATCCAGTGAACCCAAAACCAGGTACACTCCGTTACGCCGTGATTCAAGATGAACCGTTATGGATAATATTCGAAAGAGACATGGTGATTCAACTAAAAGAAGAGTTAATAATGAATTCATTCAAAACCATTGATGGAAGAGGTGCTAGTGTTCACATTGCTAATGGTCCTTGCATTACTATTCAATATGTCACTAATGTTATTATTCATGGTATAAATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCATTATGGGTGGAGAACTGTATCGGACGGTGATGGTGTTTCCATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCATTGTCTAATTGTAATGATGGTTTGATTGATGCTATACATGGGTCCACTGCAATTACTATATCCAACAATTACATGACACACCATGATAAAGTTATGCTTTTGGGTCATAGTGACACGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCTATTGGAGGTAGTGCCAACCCAACCATCAATAGCCAAGGTAACAGATTTGTTGCTCCCAATGACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCAGCAGAAAATGAATGGAAAGGATGGAATTGGAGAACAGAAGGGGACTTAATGGTAAATGGTGCATTTTTTACATCATCAGGAGCAGGAGGATCATCATCAAGTTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTTTAGTTGGTACGATAACGACTACTGCTGGTGCACTTAACTGTAGGAAGGGTTCACGTTGCTGA 1236 0.4061 MTTTTTTSLSFLFFLFSLITPFSLISSSPLPNPHLVSQQVTRKINESIARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSKDDDPVNPKPGTLRYAVIQDEPLWIIFERDMVIQLKEELIMNSFKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAAENEWKGWNWRTEGDLMVNGAFFTSSGAGGSSSSYARASSLSARPSSLVGTITTTAGALNCRKGSRC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01119 411 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Car07g01119 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Car07g01119 411 PANTHER PECTATE LYASE 7 408 - -
Car07g01119 411 SUPERFAMILY Pectin lyase-like 47 406 IPR011050 -
Car07g01119 411 Pfam Pectate lyase 143 327 IPR002022 -
Car07g01119 411 PANTHER PECTATE LYASE 18-RELATED 7 408 IPR045032 GO:0030570
Car07g01119 411 Gene3D - 61 404 IPR012334 -
Car07g01119 411 SMART amb_all 136 333 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01119 Car-Chr7 9979769 9981924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01119 2 411 Polysaccharide Lyase AT5G63180 79.562 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01119 K01728 - gmx:100779940 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01119 07 9979769 9981924 Car05g01667 05 61508310 61510693 PCT