Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01111 ATGTCTATTATCACTTCCTTCAAATCCCTAACAATGGCAGAATCTTGCATACTCTCTCAACCTTCACTCTTCTACACCAAAACCAAATCCTCATTCATCTCAAATTCTGTTAAGAAACCTTTCAAGCTACAAAACCCATCATACAATTCTTCACGCTCTCTCTCCCTCATTGCTAGAAGAAGAAGAACACACCATTCTTCTCTTCTCACGTTCGTAGCACAGACTTCAGATTGGGCTCAACAGGAAGAACAAGAGGACGGAGCTGCTTGGGAGAATCAAGGTGAACCCacttggggaaatgcagatgttagtgaagctgaaaccaaccaagttgagagttttgaggaaccatctgaagatttgaagatttttgttgggaatttgccttttgatgttgatagtgagaaattggccttgctttttgaacaggttgggactgttgaaattgctgaggtaatttataatagggatactgaccgcagtcgtggattcggatttgtaaccatgagtacagtggaagaagttgagaaggctgtgaacaagtacagtggctttgaattagatggaaggttattgactgttaataaggccgctccaagaggagtacgtcccgagcgtgcaccacgtgcctttgattccggttccggtttaagagtctacgttggtaacttgccatgggatgtcgacagttctcgcttggaacaaattttcagcgaacatggtaaggttgagagtgttcgggtagtctatgacagagagaccggtcgatcacgtggttttggatttgttacaatgtctagtgagaatgatatgaatgaagccatcagtgctcttgacggtcagagcttgaacgggagggcgcttagagtgaatgttgctgaggaaaggcccaggcgcaactctttctga 909 0.1342 MSIITSFKSLTMAESCILSQPSLFYTKTKSSFISNSVKKPFKLQNPSYNSSRSLSLIARRRRTHHSSLLTFVAQTSDWAQQEEQEDGAAWENQGEPTWGNADVSEAETNQVESFEEPSEDLKIFVGNLPFDVDSEKLALLFEQVGTVEIAEVIYNRDTDRSRGFGFVTMSTVEEVEKAVNKYSGFELDGRLLTVNKAAPRGVRPERAPRAFDSGSGLRVYVGNLPWDVDSSRLEQIFSEHGKVESVRVVYDRETGRSRGFGFVTMSSENDMNEAISALDGQSLNGRALRVNVAEERPRRNSF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01111 302 CDD RRM_HP0827_like 218 294 - -
Car07g01111 302 SUPERFAMILY RNA-binding domain, RBD 117 215 IPR035979 GO:0003676
Car07g01111 302 Gene3D - 70 205 IPR012677 -
Car07g01111 302 Gene3D - 206 301 IPR012677 -
Car07g01111 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Car07g01111 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Car07g01111 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 192 IPR000504 GO:0003723
Car07g01111 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Car07g01111 302 PANTHER OS02G0815200 PROTEIN 104 302 - -
Car07g01111 302 PANTHER OS02G0815200 PROTEIN 4 93 - -
Car07g01111 302 CDD RRM_HP0827_like 122 199 - -
Car07g01111 302 SMART rrm1_1 122 195 IPR000504 GO:0003723
Car07g01111 302 SMART rrm1_1 218 291 IPR000504 GO:0003723
Car07g01111 302 PANTHER RIBONUCLEOPROTEIN 104 302 - -
Car07g01111 302 PANTHER RIBONUCLEOPROTEIN 4 93 - -
Car07g01111 302 SUPERFAMILY RNA-binding domain, RBD 210 300 IPR035979 GO:0003676
Car07g01111 302 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01111 Car-Chr7 9891060 9893891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01111 123 299 Eukaryotic Initiation Factors Gene Family AT3G16380 35.135 2.10e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01111 - - gmx:100811487 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01111 07 9891060 9893891 Car05g01677 05 61601460 61603865 PCT