LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01088	ATGAACCCCTACGATGATAGATACTCCGATGCTACTTCTTTTCGCGGCCGTCGCAGTGATCTAGTTGGACCTATGCCGCCGCCTAATTTTGGCCGCGGCGGTCCTGCTCCCTACGGTGCTCCTTATGTATCCCATGGACCCACCGGTTTTGGATCCGCACCCGTTACTCCGATTCCTCACTTTCTGCCTCCTCCTGGTGGATTTAGCGTAGGTCGCGGCGGTGGTTTTGGTCCTAGATTTGGTAATGGTCACGCGAGTGATAGAAAATATGACACGGGTCGTCACGTTGGTGGCAGCGGTGGAAGAGGTCGTAGCAGTGGTAGAGGCGGTGGTGGTTTTAGAGGCTCTGGCAGAGGAGGGAGTGGAGGGAGAGGCGGTGGGTTTGGAGGTAGACACGGTGGTGGTTCTTCGAAGGATGACTTGAACAACATTAATCTTCCGAAGCAAGATTTTAGGAATTTGGTCCCTTTTCAGAAGAACTTTTATGTTGAAAGCTCTTCGATAGCAGCTATGTCTGATCATCAAGTTATGCATTATCGAGCTAGTAGGGATATTACTGTGGAAGGGCATGATGTTCCGAAACCAATTCGGGGTTTTCATGAGGCAAATTTTCCTGATCACTGCCTTGAGGCCATTGCCAAGTTGGGTTTTGTTGAGCCAACTCCAATTCAGGCTCAGGGTTGGCCTATGGCTCTTACTGGTAGAGATTTAATTGGCATTGCTGAGACCGGCTCCGGTAAAACTTTGGCTTATCTACTTCCTGCTTTAGTGCACGTCAGTGCACAACCTCGACTGGTACAAGGGGAAGGTCCCATTGTCCTGGTTTTAGCACCGACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGAGCACATCTTAGATGTACATGCATTTACGGAGGTGCCCCAAAGGGCCCTCAAATTCGCGACCTAAGAAATGGTGTTGAGATTGTTATTGCTACTCCTGGTCGTCTAATAGATATGTTGGAAGCTCAACACACAAACCTGCAGAGAGTGACATACCTTGTCTTGGATGAAGCTGATCGAATGTTGGATATGGGATTCGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTGTACTGGAGTGCAACGTGGCCAAAGGAGGTTGAAACTTTGGCAAGGCAGTTTCTGCACAACCCATATAAGGTAGTTATTGGGTCACCATATCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTCACCGACATGGAGAAATATAACAGATTGCTCAAGCTGCTGAAAGAAGTAATGGATGGGAGCCGGATTCTAATATTTACAGAAACAAAAAAAGGATGTGACCAAGTTACAAAACAATTGAGAATGGATGGATGGCCAGCATTATCTATCCATGGTGATAAAAACCAGGCTGAAAGAGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGATATAAAATGTGTGGTCAATTATGATTTTCCATCAAGCCTTGAAGATTATGTCCACCGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACAGTTTTTTTACCCGTGCCAATGCCAAGTTTGCTAGGGATTTGATTAAGATCTTACAAGATGCTGGTCAGGTTGTTAGTCCTGCATTATCTGAATTGTCTCGGTCAGCTGGTTCTGGTCAACATGGACCAAGGGGAGGCTTTCGCTCAAGAGGACGAGGAGGAGGCTATGGCAATCGGGGTTCAACGTCAGGATCCAATGCCATTCCTGTAGGTGGGAAGAGGCCTTGGCAGTTCATGTAG	1869	0.4676	MNPYDDRYSDATSFRGRRSDLVGPMPPPNFGRGGPAPYGAPYVSHGPTGFGSAPVTPIPHFLPPPGGFSVGRGGGFGPRFGNGHASDRKYDTGRHVGGSGGRGRSSGRGGGGFRGSGRGGSGGRGGGFGGRHGGGSSKDDLNNINLPKQDFRNLVPFQKNFYVESSSIAAMSDHQVMHYRASRDITVEGHDVPKPIRGFHEANFPDHCLEAIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQQEAMKFGSRAHLRCTCIYGGAPKGPQIRDLRNGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLHNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLLKLLKEVMDGSRILIFTETKKGCDQVTKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTRANAKFARDLIKILQDAGQVVSPALSELSRSAGSGQHGPRGGFRSRGRGGGYGNRGSTSGSNAIPVGGKRPWQFM	622

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01088	622	CDD	DEADc_DDX5_DDX17	209	404	-	-
	Car07g01088	622	CDD	SF2_C_DEAD	416	546	-	-
	Car07g01088	622	SMART	ultradead3	216	419	IPR014001	-
	Car07g01088	622	PANTHER	LD32873P	139	610	-	-
	Car07g01088	622	Pfam	Helicase conserved C-terminal domain	427	537	IPR001650	-
	Car07g01088	622	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	270	557	IPR027417	-
	Car07g01088	622	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	139	610	-	-
	Car07g01088	622	Gene3D	-	159	407	IPR027417	-
	Car07g01088	622	Gene3D	-	408	579	IPR027417	-
	Car07g01088	622	SMART	helicmild6	456	537	IPR001650	-
	Car07g01088	622	MobiDBLite	consensus disorder prediction	72	145	-	-
	Car07g01088	622	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	349	357	IPR000629	-
	Car07g01088	622	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	197	225	IPR014014	GO:0003724
	Car07g01088	622	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	228	403	IPR014001	-
	Car07g01088	622	MobiDBLite	consensus disorder prediction	575	622	-	-
	Car07g01088	622	Pfam	DEAD/DEAH box helicase	221	392	IPR011545	GO:0003676\|GO:0005524
	Car07g01088	622	MobiDBLite	consensus disorder prediction	1	36	-	-
	Car07g01088	622	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	431	576	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01088	Car-Chr7	9701650	9706420	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g01088	185	575	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.949	1.99e-70	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01088	K12823		-	gmx:100817092	917.916