LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01083	ATGGCATCATCCAGCTCTTACAATTCTCCATGTGCTGCGTGCAAATTCTTAAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCATACTTCCCACCGGAAGAGCCACAAAAATTTGCAAACGTGCACAAAATATTTGGCGCTAGCAATGTGACAAAGCTTCTTAACGAACTCCTCCCTCACCAAAGAGAAGATGCAGTGAACTCACTTGCTTATGAAGCTGAAGCACGAGTGAGGGATCCAGTTTATGGTTGTGTTGGTGCTATCTCTTTTCTTCAAAGACAAGTTCAAAGGCTTCAAAAGGAACTTGATGCTGCTAACACTGATCTTCTTCGTTATTCTCTTACTGATATtcctccacctccaccaccttctctttctcttcctcAAGGAATTGTAACGGTTCAACAAACACACTTTACTGCTGCAAGGAATGAAGCCTTTTATACACAATctcctcctccaactacaactactactactaatactTATGATTTTCCTTATTCTGCTGTTCCTTGGAATGATACTTCTTCTGAGGACATGAGTGAAGGTGGAGGAGGAAATCATTTTTGA	573	0.3595	MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLTDIPPPPPPSLSLPQGIVTVQQTHFTAARNEAFYTQSPPPTTTTTTNTYDFPYSAVPWNDTSSEDMSEGGGGNHF	190

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01083	190	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	1	186	-	-
	Car07g01083	190	PANTHER	ELONGATED PETIOLULE 1	1	186	-	-
	Car07g01083	190	Coils	Coil	89	116	-	-
	Car07g01083	190	Pfam	Lateral organ boundaries (LOB) domain	10	106	IPR004883	-
	Car07g01083	190	ProSiteProfiles	LOB domain profile.	9	110	IPR004883	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01083	Car-Chr7	9654167	9655731	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g01083	1	116	AS2 family	AT5G63090	92.308	3.95e-76	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Car07g01083		LOB	2.9e-42	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01083	-		-	gmx:100775922	280.411

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g01083	07	9654167	9655731	Car05g01706	05	61970436	61972765	PCT