Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01048 ATGGCTATCAGAGGCGTCGATTTCAAATGgtacgatggctttttcttgtccatgctcgccaccagcgtAGTTATTGTTGCAATCAATTGGAAACGGTACCATTCTTGTGCATACCCCTTGCACATATGGATTGTCGTGGACTACACTGCTGTGTTTGTTTTCCGTCTCTTGATGTTTGTCGATAATGGGTTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGCTGTCCTTTCAATTCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATAATTGGTACCATGTGGTACAGCAACGCCAAGAACTGTTTGCCTGAACAGGGACAGAAATGGGGATTCCTCATCTGGTTACTTTTCAGTTATTGTGGACTTCTTTGCATTGCTTGCTTGTCAGTGGGGAAGTGGTTGACTAGACGACAAGCACACTTAGTTCGTGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTTTGGTTGATATGATCCGCGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCAGCCCGGACTTTACCTAACACCAGCTCAGAGAGAAGCTGTTGAAGCTTTAATTCAGGAACTACCGAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGCGAATGCCCCATCTGCTTAGAAGAGTTCCGTGTTGGGAATGAGGTCCGTGGCTTGCCTTGTGCGCACAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTGTTTCCAAATCTTGATCTTAGTGCCCTGTCCAATCTTCGTCCTGATTCTGAACGATCTTCTGCCAGTGTTGTGACAACAACTAGATATGTGAGAGGCCAACCTTCTAGTCAAAGTTATCTGTTAAGGTTACAGGGTCTTCTCCGTCCAGTGCGTTCTGGAATTGCAGGGCCAGTTGGAGACACAGATATTGCTTTGCAAAATGCTGAGAACGGTGTTGTACCTATTGTGACACAAAATGCACCAAACAGAGACCAGGTCTCTTCTGTGGTATGCATGCCTGTTAGCATTTCCTCTGCACAGAGTTAG 1143 0.4471 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCAYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQRYARFCGRVAVLSILALLLYPFLWAWTIIGTMWYSNAKNCLPEQGQKWGFLIWLLFSYCGLLCIACLSVGKWLTRRQAHLVRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYQPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSGIAGPVGDTDIALQNAENGVVPIVTQNAPNRDQVSSVVCMPVSISSAQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01048 380 SMART ring_2 235 275 IPR001841 -
Car07g01048 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 363 - -
Car07g01048 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 363 IPR044793 GO:0004842|GO:0010182
Car07g01048 380 SUPERFAMILY RING/U-box 217 284 - -
Car07g01048 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Car07g01048 380 Pfam Ring finger domain 234 276 IPR001841 -
Car07g01048 380 CDD RING-H2_RNF111_like 234 278 - -
Car07g01048 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01048 Car-Chr7 9288572 9294734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01048 58 362 C3H Transcription Factor Family AT3G47990 72.492 1.21e-161 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01048 K16284 - gmx:100812016 707.597