LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01046	atgaaggaaagcagTGATGGTTTTGTAAGAGCGGATCAGATTGATCTGAAGAGCATAGATGAACAGCTTGAGAGGCATCTCAACAAGGTGTTGACTATTGACAAGAAAAAGCGCGTTGAAGAAGAAGATTCTGCTACTTCTGCTACCTCTGATCACGTTCGTGTTCACACCAGCGCCACTACTTCTCCAACATCCATCAAGTTCAAAACTAACTTCAAGAAGCAAAAACAAGAATGGGAAATTGATCCTTCCAAACTTATCATCAAGAGTGTTATTGCTCGTGGCACTTTTGGCACTGTTCATCGTGGTGTCTATGATTCTCTAGATGTTGCTGTTAAATTGCTTGATTGGGGTGAAGAAGGCCAAAGGACAGAAGCTGAGGTTTCTTCACTGAGGGCAGCCTTCATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTCACTAAGTTTATAGGGGCAACAATGGGATCTGCAGAATTGCAGATTCAAACTGATAGTGGCCTAATTAGCATGCCAAACAATGTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGTACGTTGAAATCATACCTAATAAAGAACAGAAGGAGGAAATTAGCTTTTAAGGTTGTCATCCAGCTGGCGCTTGATTTAGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTGAAGACAGAGAACATGCTGCTGGATAAGACTCGCACGGTTAAAATTGCTGATTTTGGGGTTGCACGAGTGGAAGCATCAAATCCCAATGATATGACTGGGGAGACTGGAACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGAAACCCCTATAACAGGAAATGTGACGTGTACAGTTTCGGCATCTGTTTATGGGAGACATATTGTTGTGACATGCCGTATCCTGACCTAAGTTTCTCAGAAATTACTTCAGCTGTTGTTCGCCAGAATTTGAGACCAGAAGTACCAAGATGCTGCCCAAGTTCTCTTGCAAATGTAATGAAGAAATGCTGGGACGCCAGTCCTGATAAGCGGCCAGAGATGGATGAGGTAGTTTCGATGCTGGAGGCCATTGACACATCCAAAGGTGGAGGTATGATCCCTAATGATCAGCAGCAGGGTTGTTTTTGCTTCCGCAAGCATAGAGGGCCATGA	1170	0.4316	MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRVEEEDSATSATSDHVRVHTSATTSPTSIKFKTNFKKQKQEWEIDPSKLIIKSVIARGTFGTVHRGVYDSLDVAVKLLDWGEEGQRTEAEVSSLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDSGLISMPNNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEVPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPNDQQQGCFCFRKHRGP	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01046	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Car07g01046	389	Gene3D	Transferase(Phosphotransferase) domain 1	187	379	-	-
	Car07g01046	389	CDD	STKc_MAP3K-like	92	360	-	-
	Car07g01046	389	SMART	serkin_6	86	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01046	389	SUPERFAMILY	Protein kinase-like (PK-like)	56	360	IPR011009	-
	Car07g01046	389	Pfam	Protein tyrosine and serine/threonine kinase	88	360	IPR001245	GO:0004672\|GO:0006468
	Car07g01046	389	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	1	383	-	-
	Car07g01046	389	ProSiteProfiles	Protein kinase domain profile.	86	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car07g01046	389	PRINTS	Tyrosine kinase catalytic domain signature	183	196	IPR001245	GO:0004672\|GO:0006468
	Car07g01046	389	PRINTS	Tyrosine kinase catalytic domain signature	221	239	IPR001245	GO:0004672\|GO:0006468
	Car07g01046	389	PRINTS	Tyrosine kinase catalytic domain signature	287	309	IPR001245	GO:0004672\|GO:0006468
	Car07g01046	389	PRINTS	Tyrosine kinase catalytic domain signature	331	353	IPR001245	GO:0004672\|GO:0006468
	Car07g01046	389	PANTHER	DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED	1	383	-	-
	Car07g01046	389	Gene3D	Phosphorylase Kinase; domain 1	74	169	-	-
	Car07g01046	389	MobiDBLite	consensus disorder prediction	38	57	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01046	Car-Chr7	9271171	9276127	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g01046	1	321	MAP Kinase Kinase Kinase	AT5G50000	78.947	0.0	539

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Car07g01046		PK_Tyr_Ser-Thr	1.1e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01046	-		-	gmx:100807921	707.597