Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01044 ATGAATACTCATCTCTCTAATCAAAGGGATCGCCGCATCCTATCATTCCCAGCGGTTCACCCTTGCCAAAACATATCTCCACCAACACTAATCACTTCTCTAATCACTCTCTCACAAGCTATATCCAATTTCAAACCCGATTCTTTCCCCACACAACGACGCAACGCAAGAGAAACTATTCGTCAAATTAACATCATCTCAATATTCCTTCACGAAATTCAACACCATAGTAACTCCACCATCCTCTGTTTCTCCGAACTTCACTTCACTTTACAAAAAATTCACTTCTTAATGCAGGATTGTACTCACGAATCCGCACGGATTTTTATGCTCGCCAAATCTCAACACGTGGCATCTCAATTTCGTTCTCTTATTCGCGCCACAGCTACTACGCTTGATGTTTTACCTTTACATGGAATCGACGTTTGCGACGAAGTGAAAGAGTTAGTTGAGTTAGTTACGAAACAAGCGAGAAAAGCTAAATTCGAAGTGGACCCCACCGACGAGATTTCAAGCAAAAAACTTCATTTCATTCTTCATCAATTCGAGAGAGGAATCGAACCTGATATCAGTTCCATGAAAGAAATTCTCGATTACGTAAAAATCAAAAACTGGAATGATTGCAACGCAGAGATTAAATTCTTAGAAGACGAAATAAGCTTCTTAGAGAATCACAATTGTGACGAACGAGAAGTTCCATTGTTGAGTAGCTTAATTGGATTTTTAAGCTACTGTAGGGGAGTGATATTCGAATCTCTTGTTCTTGATCGAAATTCTGATGAATCCGAAGAATCTCGACGCAGCACGGAGATGATAACGATAACAACTTGTTTGAATCCAGAGGATTTTCGGTGTCCAATTTCACTCGAATTAATGACAGATCCAGTAACAGTTTCAACAGGACAAACCTACGATCGCGTTTCAATTCAGAAATGGCTTAAATCAGGAAAGAAAAAATGCCCCAAAACAGGGGAGAATCTCAATAACACAGAGTTAGTTCCAAACACAACGCTCAAGAAACTTATTCAACAATTCTGCACCGACAACAATGTTTCATTCACCAAATCGTGTAACCGTATTCGTGACATAACGAGAACAATTTCACCAGGTAGTTCTTCAGCAGCACATGCTATGCAGTTTCTATCGTGGTTTCTAACGAAGAAGCTCGTTTTCGGAACAGAAGAAGAGAAGAACAAAGCAGCTTACGAAATTCGTTTGTTAACAAGATCGAGTATTTTTAACAGATCGTGTTTGATTGAAGTTGGAACTGTTCCTCCATTGTTGGAACTTTTAGCTACGAATAATAGGAATAAAACGACGCAAGAGAATGCAGTTTCTGCTTTGTTGAAACTCTCAAAGCATGCTAATGGGCCTGAAAATATAATGGCCCATGAAGGTTTAAAGCCCATTATCGAATTACTTAAAAATGGGCTTAGCCTTGAATCTCGTCAAATCGCAGCCGCTATAATATTCTATCTTTCATCTGTGAAAGAATACAGAAATATAATTGGGGAAAATCAAGATGCAATTTTAGGGTTAGTGGAATTGGTTAAAAATGGAACAACATGTGGGAAAAAGAATGCAGTTGTTGCGATTTTCGGACTTCTTTTACTTCCTCGGAATCATAAACGCGTGCTTGAAGCGGGTGCTGTTCACGCGCTTGTTTCGATTTTAGATTCTTCGTGTAAAGAAGAACTTGTAACTGAAGCTTTGGCGGTTCTTGCGGCGTTGGCTGAGAATTTCGATGGAGCGAACGCTGTGTTGGAAGCTTCTGGTTTATCGTTGATTACTGGGATGTTGAGATCTGCTACTTCGCGTACAGGGAAGGAACACTGTGCTTCAATTTTGTTATCACTGTGTGTTAATATTGGTGCTGATGTTGTAGGTGTTCTTGCTAAGGACGTTACGGTTATGCCTTTGCTTTATTCGCTTCTTACTGATGGTACTTCTCATGCTGCTAAGAAAGCGCGTTTCCTTATTAAAGTTTTACAGGATTTTAACGAAACAATAGCTTCTCGATTGAAAGGTTCTTCAGTTCCACGTGAAAGATCGCTTAACGTTTGTTGA 2067 0.3962 MNTHLSNQRDRRILSFPAVHPCQNISPPTLITSLITLSQAISNFKPDSFPTQRRNARETIRQINIISIFLHEIQHHSNSTILCFSELHFTLQKIHFLMQDCTHESARIFMLAKSQHVASQFRSLIRATATTLDVLPLHGIDVCDEVKELVELVTKQARKAKFEVDPTDEISSKKLHFILHQFERGIEPDISSMKEILDYVKIKNWNDCNAEIKFLEDEISFLENHNCDEREVPLLSSLIGFLSYCRGVIFESLVLDRNSDESEESRRSTEMITITTCLNPEDFRCPISLELMTDPVTVSTGQTYDRVSIQKWLKSGKKKCPKTGENLNNTELVPNTTLKKLIQQFCTDNNVSFTKSCNRIRDITRTISPGSSSAAHAMQFLSWFLTKKLVFGTEEEKNKAAYEIRLLTRSSIFNRSCLIEVGTVPPLLELLATNNRNKTTQENAVSALLKLSKHANGPENIMAHEGLKPIIELLKNGLSLESRQIAAAIIFYLSSVKEYRNIIGENQDAILGLVELVKNGTTCGKKNAVVAIFGLLLLPRNHKRVLEAGAVHALVSILDSSCKEELVTEALAVLAALAENFDGANAVLEASGLSLITGMLRSATSRTGKEHCASILLSLCVNIGADVVGVLAKDVTVMPLLYSLLTDGTSHAAKKARFLIKVLQDFNETIASRLKGSSVPRERSLNVC 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01044 688 Pfam Armadillo/beta-catenin-like repeat 414 452 IPR000225 GO:0005515
Car07g01044 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 592 IPR000225 GO:0005515
Car07g01044 688 PANTHER OS07G0532750 PROTEIN 7 672 - -
Car07g01044 688 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Car07g01044 688 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Car07g01044 688 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Car07g01044 688 PANTHER U BOX DOMAIN-CONTAINING 7 672 - -
Car07g01044 688 CDD RING-Ubox_PUB 283 325 IPR045210 -
Car07g01044 688 SUPERFAMILY ARM repeat 388 664 IPR016024 -
Car07g01044 688 SUPERFAMILY RING/U-box 279 353 - -
Car07g01044 688 SMART arm_5 538 579 IPR000225 GO:0005515
Car07g01044 688 SMART arm_5 410 453 IPR000225 GO:0005515
Car07g01044 688 SMART arm_5 455 495 IPR000225 GO:0005515
Car07g01044 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 354 IPR013083 -
Car07g01044 688 Gene3D - 375 536 IPR011989 -
Car07g01044 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 466 IPR000225 GO:0005515
Car07g01044 688 Gene3D - 537 675 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01044 Car-Chr7 9265392 9267899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01044 4 683 U-box Gene Family AT1G60190 39.542 7.89e-162 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01044 - - mtr:MTR_4g107010 1044.26