Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01029 ATGGCATCATTCACAGGCACTACACAGAAATGTAAAGTATGTGAAAAGAAAGTCTACTGGGTGGAACAACTCACTGCTGACAACAAAGTGTACCACAAGTCTTGCTTCAAATGCCACCACTGCAAGGGTACCCTCAAGCTGAGCAATTATTGTTCCTATGAGGGTGTTTTATATTGTAAGCCTCATTTTGATCAACTATTTAAAATGACTGGAAGTTTGGACAAAAGTTTTGAAGGTATAGCAAGAATTGCTAGATTTGAAAGATCTGCTGATCAGGTCCAAGCGAATAAAAAGGTTTCAAGATTGTTTATTGGAACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTGTACCCTATTGAAAAGGTGGGTGTTGATGGGAAATCTTACCATAAGTCTTGCTTTAGGTGCACACATGGAGGTTGTGTAATTAGTCCATCAAATTATGTGACACATGAACATAGTCTATATTGTAGACACCACCATAATCAACTCTTCAAGCACAAGGGTAATTTCAGCCAATTTCACAAGCATGAGCAAGTTCAAGGGATGATGATTGAGAACACAACATCTGAGTAA 579 0.3817 MASFTGTTQKCKVCEKKVYWVEQLTADNKVYHKSCFKCHHCKGTLKLSNYCSYEGVLYCKPHFDQLFKMTGSLDKSFEGIARIARFERSADQVQANKKVSRLFIGTQEKCVGCKKTVYPIEKVGVDGKSYHKSCFRCTHGGCVISPSNYVTHEHSLYCRHHHNQLFKHKGNFSQFHKHEQVQGMMIENTTSE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01029 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Car07g01029 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Car07g01029 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Car07g01029 192 Pfam LIM domain 110 165 IPR001781 -
Car07g01029 192 Pfam LIM domain 11 65 IPR001781 -
Car07g01029 192 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Car07g01029 192 PANTHER OS06G0237300 PROTEIN 1 189 IPR045268 GO:0051015
Car07g01029 192 Gene3D Cysteine Rich Protein 104 174 - -
Car07g01029 192 Gene3D Cysteine Rich Protein 5 75 - -
Car07g01029 192 SMART lim_4 109 161 IPR001781 -
Car07g01029 192 SMART lim_4 10 62 IPR001781 -
Car07g01029 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Car07g01029 192 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Car07g01029 192 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Car07g01029 192 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01029 Car-Chr7 9177911 9180118 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Car07g01029 LIM 7.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01029 K09377 - gmx:100792627 363.614