Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01008 ATGGCTTCCTCTTCAGATCCTCCCTCTTCCAGACACCACACTTACAACCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGACAACGTTCACTTAATCGGTCTCGACGATGCCGCCACCCGACTAGGTGTTGAAAGAAGACGGATCTACGATATAGTTAACGTTTTAGAGAGCATCGGGGTTCTTGCAAGAAAGGCCAAGAATCAATATACCTGGAAAGGATTTGCGGCAATTCCTGTTGCTTTACAGGAGCTCAAGGAAGAGGGTTTATGGAATAACCTTAATTCCCATGAAGCTGGTAATGAAGGGGGCAATGAAGATGCAAAGGTATCAGATGAGGATGATGAAGAAGAATCATTATCCCAACCCACTGGCAGTCAGAGTGACAGCCTGAACCCTAACTCTACTGTTCCCAGATCTCTGAAAAATGATAGAAGGGAAAAATCTTTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAAATGATATCCCTTGATGATGCAGCAAGGTTGTTACTGGGAGATGCATATAATTCATCAACAATGAGAACAAAAGTTAGACGCCTATATGATATTGCAAATGTGCTAACCTCCATGAACCTTATTGAAAAGACCCATACCACAGATACAAGAAAACCAGCGTTCAGGTGGCTTGGCTTAAAAGGGAAGACATGGAATGAGTCAATTTACAATTCAAATCAAAATGAGTCTAGGAAAAGGGCTTTTGGAAATGATGTCACAAACATCAGCTTTACGAGGAGTAATAGAACTGATTTTTTCATGAGTGGGGACTTCAGCCAGAACATTAAGAAGCAAAAGACACAGGAAAATGATAGTGGGTTATGCCAGGAAGATAAAAGCAATATGAAACAAGGCATAAAACAGGCTTCAAGCAACTATCAATTTGGTCCTTTTGCTCCAGCCTTTGTATCCAAAGCTGGAAACTCTGAGAATAGCAAAGTGAAGCAGGCGCATGATTGGGAGAGTCTCGCAACTGCACATTGCCCTCAATATCAAAACCAAGGCAATTAA 1074 0.419 MASSSDPPSSRHHTYNRKQKSLGLLCTNFLSLYNRDNVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFAAIPVALQELKEEGLWNNLNSHEAGNEGGNEDAKVSDEDDEEESLSQPTGSQSDSLNPNSTVPRSLKNDRREKSLALLTQNFVKLFVCSNVEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTWNESIYNSNQNESRKRAFGNDVTNISFTRSNRTDFFMSGDFSQNIKKQKTQENDSGLCQEDKSNMKQGIKQASSNYQFGPFAPAFVSKAGNSENSKVKQAHDWESLATAHCPQYQNQGN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01008 357 MobiDBLite consensus disorder prediction 102 151 - -
Car07g01008 357 MobiDBLite consensus disorder prediction 129 147 - -
Car07g01008 357 SMART E2F_TDP_2 17 82 IPR003316 GO:0005667|GO:0006355
Car07g01008 357 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Car07g01008 357 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 355 - -
Car07g01008 357 Gene3D - 148 235 IPR036388 -
Car07g01008 357 Gene3D - 12 84 IPR036388 -
Car07g01008 357 Pfam E2F/DP family winged-helix DNA-binding domain 18 82 IPR003316 GO:0005667|GO:0006355
Car07g01008 357 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Car07g01008 357 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Car07g01008 357 PANTHER TRANSCRIPTION FACTOR E2F 5 355 IPR015633 GO:0000978|GO:0006357
Car07g01008 357 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01008 Car-Chr7 8941824 8944806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01008 12 355 E2F-DP Transcription Factor Family AT3G48160 54.391 2.06e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Car07g01008 E2F_TDP 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01008 K09391 - gmx:100795252 501.901