Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01002 ATGGGGCGTGCAAAAGTAGCAATAAAATACATCAATAATGAAAAAGTTCGCAAAATAACTTTTATGAATAGAAAAAAAGGATTAACAAAGAAAGTTTCGGATTTTTCTATCAAGTCCGGAGGCAAAGCTTGCTtgattatgtatgatggtgatgataatgttgCGCCAACAATATGGCCACCAGACCCTACACTTGTAAACTCAATGCTTCAAGAATATgagaatcaaaagattgaaacatctcttaagatttttgatatcaaagacTACTTCAAAATTAAGAAGGAAATAATTGAAGCTGAAATTTTAAAAGTGAAAAAAGCTATATTGGGGAACAAGTTTCCAACTTGGGATCCATCTTTCAATAACATGCAAGTGGAGCATCTTACGGCTTTCATGGAGACTATAAATGCTAAGATTCAAGATTGTAATGAAAAAATAAACATGATGAAAAATATTCAAGAAATTGAAAGTAATTTCTTGCATAACACGTCTCACATGCAAAATATGGTTCCAGAGAGTCTTGACTCCTCAAATTCAACCCAAATCAATGTCATTCAAAGCATCCCTCCAATGGAACAATACATCCATGATCCTATGAAATTACCACATGATGATGTTTATGAGATGGTAGATTTCACTAATCATGTTGATTTGCCTCCAAATTCATCAACAAACCAACTTTGTCAACTTGTGGAGTGTGATGATTTAGAGGTTAAGCCTATTAATGTTTGTCAACTTATGGAGTGTGATGATTTAGAGGTTAAGTCTATTAatgaacgagccaatcaatttgctgatgttgatgattggaccaatcaacttgatgatgatattTTGAATTGGATTCGTCAACCTGATCAGTTTTCTTGGAAAGATATTTCCTTGTTACCTCCAACTGAGCATGAAAGTGCAAGTTCGAATGCATTGACCCGACCAAAATATAGTTTTTAA 954 0.2914 MGRAKVAIKYINNEKVRKITFMNRKKGLTKKVSDFSIKSGGKACLIMYDGDDNVAPTIWPPDPTLVNSMLQEYENQKIETSLKIFDIKDYFKIKKEIIEAEILKVKKAILGNKFPTWDPSFNNMQVEHLTAFMETINAKIQDCNEKINMMKNIQEIESNFLHNTSHMQNMVPESLDSSNSTQINVIQSIPPMEQYIHDPMKLPHDDVYEMVDFTNHVDLPPNSSTNQLCQLVECDDLEVKPINVCQLMECDDLEVKSINERANQFADVDDWTNQLDDDILNWIRQPDQFSWKDISLLPPTEHESASSNALTRPKYSF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01002 317 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Car07g01002 317 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Car07g01002 317 PANTHER PROTEIN, PUTATIVE-RELATED 3 259 - -
Car07g01002 317 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Car07g01002 317 PANTHER MADS BOX PROTEIN 3 259 - -
Car07g01002 317 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car07g01002 317 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Car07g01002 317 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01002 Car-Chr7 8879341 8880294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01002 1 146 Type I MADS-box Gene Family AT5G55690 31.788 6.52e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car07g01002 SRF-TF 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01002 - - cam:101509886 552.747